Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F13
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 41 6e-04
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 30 1.2
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 30 1.2
U97552-6|AAX55683.1| 216|Caenorhabditis elegans Hypothetical pr... 29 2.7
U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical pr... 29 2.7
U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z73423-4|CAH60746.1| 307|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z73423-3|CAA97775.2| 327|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81588-2|CAB04712.1| 379|Caenorhabditis elegans Hypothetical pr... 27 8.3
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr... 27 8.3
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 40.7 bits (91), Expect = 6e-04
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLD 91
VHI+GG+ G+ F+ FS+D+DAR AM D
Sbjct: 33 VHIIGGDEGEVFVGFSSDDDARLAMTKD 60
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 20 GGELGDAFIAFSTDEDARQAMM 85
G GDAF+ F T+EDA+Q ++
Sbjct: 318 GRPTGDAFVQFETEEDAQQGLL 339
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 20 GGELGDAFIAFSTDEDARQAMM 85
G GDAF+ F T+EDA+Q ++
Sbjct: 318 GRPTGDAFVQFETEEDAQQGLL 339
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 20 GGELGDAFIAFSTDEDARQAMM 85
G GDAF+ F T+EDA+Q ++
Sbjct: 318 GRPTGDAFVQFETEEDAQQGLL 339
>U97552-6|AAX55683.1| 216|Caenorhabditis elegans Hypothetical
protein W05H7.4c protein.
Length = 216
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 316 SNTLSGYGIPGLGNPQEIPQSAVIEPPGPLISPSASNS 429
+ T+ G +P +G+P S + P PL +PS S +
Sbjct: 8 TKTMDGAFLPAVGSPNTSIDSPAVYVPTPLTAPSTSKT 45
>U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical
protein W05H7.4e protein.
Length = 666
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 316 SNTLSGYGIPGLGNPQEIPQSAVIEPPGPLISPSASNS 429
+ T+ G +P +G+P S + P PL +PS S +
Sbjct: 8 TKTMDGAFLPAVGSPNTSIDSPAVYVPTPLTAPSTSKT 45
>U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical
protein W05H7.4b protein.
Length = 663
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 316 SNTLSGYGIPGLGNPQEIPQSAVIEPPGPLISPSASNS 429
+ T+ G +P +G+P S + P PL +PS S +
Sbjct: 8 TKTMDGAFLPAVGSPNTSIDSPAVYVPTPLTAPSTSKT 45
>Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical
protein F58B3.4 protein.
Length = 601
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 47 AFSTDEDARQAMMLDGGKNKGDSS*TTTHLAIRN 148
AF+ DEDA + +++D ++ GD + T +A+ N
Sbjct: 389 AFNGDEDAGKDLIVDSDESDGDEANRKTLMALLN 422
>Z73423-4|CAH60746.1| 307|Caenorhabditis elegans Hypothetical
protein C03A3.1b protein.
Length = 307
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 109 SFIFAAIKHHRLSRVFIGTERNERISE 29
SF+F+A HR+ +++ GTE E + E
Sbjct: 275 SFLFSAF--HRIHKIYFGTESEEEVYE 299
>Z73423-3|CAA97775.2| 327|Caenorhabditis elegans Hypothetical
protein C03A3.1a protein.
Length = 327
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 109 SFIFAAIKHHRLSRVFIGTERNERISE 29
SF+F+A HR+ +++ GTE E + E
Sbjct: 295 SFLFSAF--HRIHKIYFGTESEEEVYE 319
>Z81588-2|CAB04712.1| 379|Caenorhabditis elegans Hypothetical
protein T07D10.2 protein.
Length = 379
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -3
Query: 279 NCWYWY-LNRSRNGHGCWCRHGSXXXXRQAKYWHTLTKQ 166
N W W+ NR + C CR S + Y H +T +
Sbjct: 337 NPWLWFHFNRKQLKRACPCRKSSEPLIQSLVYVHVMTSE 375
>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
protein T13H2.5b protein.
Length = 1092
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 304 TALGSNTLSGYGIPGLGNPQEIPQS 378
T +G L G G+PG+ PQ+ QS
Sbjct: 793 TGMGMQQLQGLGMPGMQLPQQAGQS 817
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 304 TALGSNTLSGYGIPGLGNPQEIPQS 378
T +G L G G+PG+ PQ+ QS
Sbjct: 2172 TGMGMQQLQGLGMPGMQLPQQAGQS 2196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,522,141
Number of Sequences: 27780
Number of extensions: 162219
Number of successful extensions: 443
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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