Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F11
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.3  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   7.3  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    24   9.7  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 121 MFRRTHTVTCNYICI 77
           +F +TH + C YIC+
Sbjct: 270 IFLKTHAIDCIYICV 284


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 244 ISDINCNLLKLDKLTVGLALFTN*LTFIYLMDT 342
           + D++  L KLD++ +G+      LTFI  +DT
Sbjct: 435 LRDVDLALGKLDRVGLGVVGIIAVLTFISFLDT 467


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 118  FRRTHTVTCNYICIIFIVRYVHNPDHS 38
            F++TH  T  Y+    I    H+PD S
Sbjct: 965  FQKTHDFTMEYVATYLIHLLSHHPDIS 991


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 370  LCQHYYACTILVNIVVVTRIRIK 438
            L +HYY   +LVN    T +R K
Sbjct: 991  LIKHYYVSAVLVNSEADTALRAK 1013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,274
Number of Sequences: 5004
Number of extensions: 28813
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)