Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F11
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical
           protein Y94A7B.8 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = -2

Query: 326 INVSQFVNKANPTVSLSNFNKLQLISLI*VT*KIIELSSFVILQFI--FIISVFELRFFL 153
           I++S FV     T +L+ F+ + L   + V   I  L  FVI + +   IIS+FE R+F+
Sbjct: 61  ISISLFVQPYQCTPALAGFS-MGLWGWMGVPPPIWTLIHFVIFRLVPVSIISMFENRYFV 119

Query: 152 YF 147
            F
Sbjct: 120 LF 121


>Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical
           protein F59C6.2 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 204 HFTIYIYYIGI*ASFFFVLYTLLW 133
           HF ++++Y+ I    FF++ T  W
Sbjct: 84  HFFLFLFYLQIATGLFFLMATTFW 107


>Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 263 LQLISLI*VT*KIIELSSFVILQFI--FIISVFELRFFLYFTH 141
           L ++SLI V   ++ LS + I   +   IIS+FE R+F+ F +
Sbjct: 84  LGVLSLIGVPNDLLMLSIYTIFMLVPVSIISMFENRYFVLFVN 126


>Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 263 LQLISLI*VT*KIIELSSFVILQFI--FIISVFELRFFLYFTH 141
           L ++SLI V   ++ LS + I   +   IIS+FE R+F+ F +
Sbjct: 84  LGVLSLIGVPNDLLMLSIYTIFMLVPVSIISMFENRYFVLFVN 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,864,069
Number of Sequences: 27780
Number of extensions: 157830
Number of successful extensions: 336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)