Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F11
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 444 QLFNSNSSDDYDIY*NGTSIIM 379
           +  N +  D YD+  NGT +I+
Sbjct: 440 EALNHDQPDKYDLIGNGTKLII 461


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 67  VRYVHNPDH 41
           + Y+H+PDH
Sbjct: 372 ISYIHDPDH 380


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 20  VSILPSTMIWIVNITNYKNYTYVITSDSMC 109
           V I+P T + +  +  Y  +  ++ S S+C
Sbjct: 294 VEIIPPTSLVVPLLGKYLIFAMILVSISIC 323


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 20  VSILPSTMIWIVNITNYKNYTYVITSDSMC 109
           V I+P T + +  +  Y  +  ++ S S+C
Sbjct: 294 VEIIPPTSLVVPLLGKYLIFAMILVSISIC 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,449
Number of Sequences: 438
Number of extensions: 2138
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)