Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F10
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   4.5  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   5.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.9  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   7.9  

>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 12  LCVREAELPIVSDAECIRKVNAVT 83
           +CVR   LP+ SD E ++   A++
Sbjct: 96  VCVRGVRLPLKSDIEAVKSPKAIS 119


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 313 SVHTVDYSDHIGQ*SIANPQKCNYTEN 393
           S+   D  D  GQ  I NP KCN + N
Sbjct: 24  SLSESDLRDSQGQLGIENPPKCNNSGN 50


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 275 PQPNPHETIPTSSVEAGHSVATAKWDHPCFRPKTPXR 165
           P P+  ET+ +S  +   S     ++HP  RP  P R
Sbjct: 385 PIPSNVETLRSSLPQRHASFMNKVYNHPLSRPPAPNR 421


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
 Frame = -1

Query: 188 FRPKTPXRSSR*XSAHAPYFTASAEGARG*DEYLLSDGVH--------FPDALGITDYWQ 33
           FR K     ++    + P F+  AE  +G  E +  +  H         PD  GI ++W 
Sbjct: 112 FRQKMLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDELDHEEEIFQNNLPDPKGIPEFWL 171

Query: 32  FCLSN 18
            CL N
Sbjct: 172 TCLHN 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,571
Number of Sequences: 5004
Number of extensions: 32942
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)