Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F10
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0295 + 14750162-14750369,14751601-14752019                       29   1.9  
05_04_0097 - 17962446-17963377,17966530-17966602                       28   3.4  
02_04_0192 + 20795659-20796309                                         28   3.4  
06_01_0951 - 7329416-7329778,7329862-7330131,7330285-7330695,733...    28   4.5  
03_06_0191 - 32228642-32228949,32229028-32230567                       27   7.8  
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700     27   7.8  

>01_03_0295 + 14750162-14750369,14751601-14752019
          Length = 208

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 224 DRLLRSWWVWSRADSAAAGRMFHEFTLRFHP 316
           D L + WW W +  S   G  F  F L  HP
Sbjct: 142 DHLRQKWWWWGQHWSCRLGIGFSSFLLGVHP 172


>05_04_0097 - 17962446-17963377,17966530-17966602
          Length = 334

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 151 QALMLLTSPPAQKELAGKMNIFSVTAFTFLMHSASLTIGN 32
           QAL+ + SPP+  E  G+   F     +FL  + +  + N
Sbjct: 157 QALLAVYSPPSAAEFTGESQAFMAPVLSFLARTGAPLLAN 196


>02_04_0192 + 20795659-20796309
          Length = 216

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -1

Query: 269 PNPHETIPTSSVEAGHSVATAKWDHPCFRPKTPXRSSR*XSAHAP 135
           P+P      S + A  S     W+H    PKTP RSSR  S   P
Sbjct: 62  PSPFHRFLPSPLRA--SSVPFSWEHRPGIPKTPARSSRSSSKQPP 104


>06_01_0951 -
           7329416-7329778,7329862-7330131,7330285-7330695,
           7331149-7331300,7332400-7332469,7333941-7334018
          Length = 447

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 257 RADSAAAGRMFHEFTLRFHPFIRWITQI-ISVNNL*RILRNVIIPKIPMVRRYSVTVY 427
           R+DS   G  +      FH F  W+    I V+N+  I+ N      P++ + ++ VY
Sbjct: 65  RSDSKVMGSTYRSCCPAFHAFCPWVNNTPIKVSNIRTIVTN---ETKPVIEKATIEVY 119


>03_06_0191 - 32228642-32228949,32229028-32230567
          Length = 615

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = -1

Query: 284 SCRPQPNPHETIPTSSVEAGHS-----VATAKWDHPCFRPKTPXRSSR*XSAHAPYFTAS 120
           S +P P+PH   PTS+ +A H+      A ++  HP          SR  +A  P   A+
Sbjct: 24  SGQPPPSPHAAAPTSTPQAFHAHLASLAAPSRAAHPATLRSILAALSRARAAGLPLLPAT 83

Query: 119 AEGARG*DEYLLSDGVHFPDAL 54
              A      LL  G   PDAL
Sbjct: 84  RVLAA---SALLRHG-RLPDAL 101


>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
          Length = 813

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 3   TRPLCVREAELPIVSDAECIRKVNAVTEKIFILPASSFCAGG 128
           T  L V+E+ +PIVSD +  R   AV    F+LP ++  AGG
Sbjct: 4   TEELLVQESTVPIVSDGDPSRP--AVRSAHFLLPRAA--AGG 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,506
Number of Sequences: 37544
Number of extensions: 239491
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)