Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F09
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    79   1e-16
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    76   8e-16
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   0.49 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   0.65 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   3.5  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    24   4.6  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    24   4.6  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    24   4.6  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    24   4.6  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    23   6.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    23   8.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    23   8.0  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 79.0 bits (186), Expect = 1e-16
 Identities = 36/59 (61%), Positives = 45/59 (76%)
 Frame = +3

Query: 99  ACPKTKPSTKFVIRNIVEAAAVRDINEASVYTSFQRPKLYAKLHYCVSCAIHSKVGRNR 275
           A PK K   ++ IRN+VE AA+RD++EASVY+ +  PKLY KL YCVSCAIHS+V R R
Sbjct: 29  AVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVR 87



 Score = 40.3 bits (90), Expect = 5e-05
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 62  HVKCVRCTNCARCVPKDKAINK 127
           HVK VRC NC+R VPKDKAI +
Sbjct: 17  HVKFVRCINCSRAVPKDKAIKR 38


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 76.2 bits (179), Expect = 8e-16
 Identities = 34/59 (57%), Positives = 45/59 (76%)
 Frame = +3

Query: 99  ACPKTKPSTKFVIRNIVEAAAVRDINEASVYTSFQRPKLYAKLHYCVSCAIHSKVGRNR 275
           A PK K   ++ IRN+VE AA+RD++EASVY+ +  PK+Y KL YCVSCAIH++V R R
Sbjct: 29  AVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHARVVRVR 87



 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +2

Query: 62  HVKCVRCTNCARCVPKDKAINK 127
           H K VRC NC+R VPKDKAI +
Sbjct: 17  HTKFVRCINCSRAVPKDKAIKR 38


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 267  APLCYGSRMTRSSGVLHTAWDVGMKYILRLRL 172
            +P+  G +MT S   + T +D G +    LRL
Sbjct: 954  SPMSQGDKMTSSESTVSTTYDFGFEAAYNLRL 985


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 143 YC*SCRCEGHKRSLSIYFIPTSQAVCKTPLL 235
           +C +C    H+    I F+P  Q  CK  LL
Sbjct: 213 FCDNCNTSVHQNCYGIPFVPEGQWFCKKCLL 243


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 195 SFQRPKLYAKLHYCVSCAIH 254
           SF RPK+   +HYC +   H
Sbjct: 139 SFVRPKVIKSVHYCEATKRH 158


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 223  FAYSLGRWNEVYTEASF---MSLTAAASTIFLITNFVDGFV 110
            F + L   + VY++  +   +SLT   S + +I NFVD  V
Sbjct: 1005 FIFQLSPTSHVYSKFDYQKLISLTLKDSDVCVIYNFVDDLV 1045


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 223 FAYSLGRWNEVYTEASFMSLTAA 155
           FA   GRWNE+ T   F     A
Sbjct: 434 FAILAGRWNEISTGGRFACFVIA 456


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 95  RCVPKDKAI 121
           RCVPKDKAI
Sbjct: 20  RCVPKDKAI 28


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 223 FAYSLGRWNEVYTEASFMSLTAA 155
           FA   GRWNE+ T   F     A
Sbjct: 435 FAILAGRWNEISTGGRFACFVIA 457


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 62  HVKCVRCTNCARCVP 106
           H++CV C +   C+P
Sbjct: 20  HIRCVECVDFDLCIP 34


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 169 SLTAAASTIFLITNFVDGFV 110
           SL  A   +F+I+ FV G+V
Sbjct: 364 SLATATVALFIISGFVSGYV 383


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 271 LRPTLLWIAHDTQ*WSFAYSLGRWNE 194
           ++PT  W AHD +  SF + L  ++E
Sbjct: 33  IQPTFFWFAHD-ETPSFKWVLNAYHE 57


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 134 DQEYC*SCRCEG 169
           D E C  CRCEG
Sbjct: 4   DDEICRVCRCEG 15


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.121    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 928,024
Number of Sequences: 5004
Number of extensions: 14472
Number of successful extensions: 42
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)