Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F09
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 77 2e-15
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 26 3.7
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502... 26 5.0
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245... 26 5.0
08_01_1005 - 10183796-10185183,10186673-10186859 25 6.5
06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676 25 6.5
12_02_0890 + 24040981-24041125,24041264-24041317,24042675-240428... 25 8.7
06_02_0037 - 10856616-10856915,10857527-10860238 25 8.7
03_02_1037 - 13576316-13576503,13576727-13576818,13577043-135770... 25 8.7
02_05_1054 + 33788244-33788511,33792010-33792117,33792199-337922... 25 8.7
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 77.4 bits (182), Expect = 2e-15
Identities = 33/58 (56%), Positives = 43/58 (74%)
Frame = +3
Query: 102 CPKTKPSTKFVIRNIVEAAAVRDINEASVYTSFQRPKLYAKLHYCVSCAIHSKVGRNR 275
CPK K +F +RNIVE AA+RD+ EA V+ + PKLYAK+H+CVSCAIH+ + R R
Sbjct: 30 CPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVR 87
Score = 42.3 bits (95), Expect = 5e-05
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 62 HVKCVRCTNCARCVPKDKAINK 127
HVK +RC+NCA+C PKDKAI +
Sbjct: 17 HVKYIRCSNCAKCCPKDKAIKR 38
>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 102 CPKTKPSTKFVIRNIVEAAAVR-DINEASVYTSFQRPKLYAKLHYCVSC 245
C KT P FV+ I++ + + +NEAS YT + + L +SC
Sbjct: 1206 CVKTLP---FVMSTIIKPLSGKLKLNEASCYTDLVGQNILSWLDVAISC 1251
>11_04_0160 +
14247463-14247584,14247710-14247923,14250099-14250215,
14251578-14251670,14251748-14251922,14252981-14253017,
14253842-14253875,14254212-14254481,14255768-14255872,
14256295-14256392,14256474-14256616,14257197-14257290,
14257378-14257487,14258018-14258172,14258252-14258332,
14258415-14258535,14259358-14259464,14259537-14259668,
14261105-14261258,14264094-14264211,14264344-14264517,
14264831-14264882,14265450-14265577,14265670-14265820,
14265904-14266242
Length = 1107
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 229 WSFAYSLGRWNEVYTEASFMSLTA 158
W+ L R+NE +TE + +S TA
Sbjct: 701 WALEIILSRYNEAFTELAALSKTA 724
>07_03_1315 -
25722757-25722876,25722972-25723328,25723924-25724500,
25724577-25725265,25725487-25725822,25726190-25726527,
25726619-25726746,25726906-25727030,25727547-25727589,
25727714-25727802,25728396-25728511,25729157-25729276,
25729752-25729794
Length = 1026
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 159 AVRDINEASVYTSFQRPKLYAKLHYCVSCAIHSKVG 266
AVR I A V +F+ + + LH+ SC VG
Sbjct: 646 AVRPIITAGVKVNFRDARGWTALHWAASCGRERTVG 681
>08_01_1005 - 10183796-10185183,10186673-10186859
Length = 524
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 190 YTEASFMSLTAAASTIFLITNFVDGFVFGHAASAVG 83
Y + SF A T+ L VDGFVFG S G
Sbjct: 258 YGDGSFSRGVLATDTVALGGASVDGFVFGCGLSNRG 293
>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
Length = 964
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +2
Query: 131 CDQEYC*SCRCEGHKRSLSIYFIPTSQAVCKTPLLRVMR 247
CD + SC+ H+ + IP + C L ++R
Sbjct: 922 CDPWFTRSCQTIAHENWQKVQHIPNKEIFCDGALFAILR 960
>12_02_0890 +
24040981-24041125,24041264-24041317,24042675-24042872,
24043367-24043635
Length = 221
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 84 PTALAACPKTKPSTKFVIRNIVEAAAVRDIN-EASVYTSFQRPKLYAKLHYCV 239
P A AA + KF+I+ + AAA ++ E S SF+ L+ + CV
Sbjct: 42 PPAAAAAEIRQNVAKFIIKRPLLAAAYTGLSEEESTNDSFKNQDLFDVVASCV 94
>06_02_0037 - 10856616-10856915,10857527-10860238
Length = 1003
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 220 AYSLGRWNEVYTEASFMSLTAAASTIFLITNFV 122
AY+ G W ++ S L AA + ++T V
Sbjct: 525 AYAAGSWRDIGASLSIFVLVAAIIVLLVVTYIV 557
>03_02_1037 -
13576316-13576503,13576727-13576818,13577043-13577082,
13577578-13577807,13577906-13578030,13578142-13578291
Length = 274
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 214 SLGRWNEVYTEASFMSLTAAASTIFLITNFVDGFVFGHAASAVG 83
SL R +VY FMS+ A S + + G +G + +G
Sbjct: 179 SLCRGKKVYEPPRFMSVNTAISQLLEVEELRGGSAYGADSLCIG 222
>02_05_1054 +
33788244-33788511,33792010-33792117,33792199-33792294,
33792406-33792498,33792598-33792683,33793009-33793433,
33793534-33793629,33793731-33793836,33793942-33794085
Length = 473
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 229 WSFAYSLGRWNEVYTEASFMSLTAAASTI 143
W A +G W+EVY +F S+ A +
Sbjct: 421 WYSAGQVGGWSEVYEGLTFASVRGAGHEV 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.121 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,280,635
Number of Sequences: 37544
Number of extensions: 100491
Number of successful extensions: 287
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
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