Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F09
(277 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical pr... 95 8e-21
Z81540-11|CAB04397.2| 191|Caenorhabditis elegans Hypothetical p... 27 1.9
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 27 2.5
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 27 2.5
Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical pr... 26 4.4
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 26 4.4
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 26 4.4
AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical ... 26 4.4
Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical pr... 25 5.8
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 25 5.8
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 25 5.8
>Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical
protein F39B2.6 protein.
Length = 117
Score = 94.7 bits (225), Expect = 8e-21
Identities = 42/58 (72%), Positives = 47/58 (81%)
Frame = +3
Query: 102 CPKTKPSTKFVIRNIVEAAAVRDINEASVYTSFQRPKLYAKLHYCVSCAIHSKVGRNR 275
CPK K KFV+RNIVEAAAVRDI +AS YT + PKLY KLHYC++CAIHSKV RNR
Sbjct: 30 CPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKVVRNR 87
Score = 42.3 bits (95), Expect = 5e-05
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +2
Query: 62 HVKCVRCTNCARCVPKDKAINK 127
HV +RCTNC RC PKDKAI K
Sbjct: 17 HVAFIRCTNCGRCCPKDKAIKK 38
>Z81540-11|CAB04397.2| 191|Caenorhabditis elegans Hypothetical
protein F46B3.14 protein.
Length = 191
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 74 VRCTNCARCVPKDKAINKVCDQEYC*SCRC 163
++C+N + CVP+ V D C S +C
Sbjct: 46 IKCSNGSHCVPRGTTGRCVLDSNPCASIKC 75
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 83 TNCARCVPKDKAINKVCDQEYC*SCRC 163
T C +C+P+ +N C E +C+C
Sbjct: 202 TRCEQCLPRAGCVNGDCVNETPNTCKC 228
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 83 TNCARCVPKDKAINKVCDQEYC*SCRC 163
T C +C+P+ +N C E +C+C
Sbjct: 202 TRCEQCLPRAGCVNGDCVNETPNTCKC 228
>Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical
protein K05C4.9 protein.
Length = 724
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 135 IRNIVEAAAVRDINEASVYTSFQRPKLYAKL 227
+++ V + +R +N A++ TSFQ Y+KL
Sbjct: 295 LKHAVFSTEIRVLNSATLETSFQTLNYYSKL 325
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 69 SASGAPTALAACPKTKPSTKF--VIRNIVEAAAVRDINEASVYTSFQRPKLYAK 224
++SG P+ + + S K V R + A RD+ +A+VY PK AK
Sbjct: 47 TSSGGPSQAVSGASSGASMKTEPVARQVSTAQMKRDLEQAAVYVPTPIPKKDAK 100
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 69 SASGAPTALAACPKTKPSTKF--VIRNIVEAAAVRDINEASVYTSFQRPKLYAK 224
++SG P+ + + S K V R + A RD+ +A+VY PK AK
Sbjct: 47 TSSGGPSQAVSGASSGASMKTEPVARQVSTAQMKRDLEQAAVYVPTPIPKKDAK 100
>AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical
protein Y59E9AL.5 protein.
Length = 99
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 80 CTNCARCVPKDKAINKVCDQEYC*SCRCEGHKR 178
C C K+ KVC Q+ C +C C R
Sbjct: 51 CCACWMRRKKESTTTKVCVQDDCTTCSCTSASR 83
>Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical
protein M04B2.4 protein.
Length = 527
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 262 TLLWIAHDTQ*WSFAYSLGRWNEVYTEASFMSLTAAASTIFLITNFVDGFVF 107
T W+ + F + N+V+T++S M T + F I FVD +F
Sbjct: 108 TAFWLKERFRDEDFKVVVVENNDVFTKSSTMLSTGGITQQFSIPEFVDMSLF 159
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +2
Query: 62 HVKCVRCTNCARCVPKDKAINKVCDQEYC 148
H +C++C C+R + +++ Q YC
Sbjct: 78 HAQCLKCVQCSRPLDENQTAFVKNGQTYC 106
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +2
Query: 62 HVKCVRCTNCARCVPKDKAINKVCDQEYC 148
H +C++C C+R + +++ Q YC
Sbjct: 78 HAQCLKCVQCSRPLDENQTAFVKNGQTYC 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.121 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,217,848
Number of Sequences: 27780
Number of extensions: 87343
Number of successful extensions: 279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
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