Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F08
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 98 8e-22
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 31 0.078
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.55
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 28 0.73
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 28 0.96
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 27 2.2
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 2.9
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 26 3.9
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 26 3.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.1
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 25 5.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.1
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 6.8
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 6.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 6.8
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 9.0
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 97.9 bits (233), Expect = 8e-22
Identities = 57/149 (38%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Frame = +3
Query: 54 LKKAVKMLSRVAPGVCTQAVAVVN-HQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSA 230
L++ + SR+ P C V H + ATLK I RLKS+KNI+KIT+++K V+
Sbjct: 2 LRQTLTQASRMRP--CISVVGFRGFHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQ 59
Query: 231 AKYTRAERDLKAARPYGEGAVQFYERAEVVALEDDPKQLYVAMTSDRGLCGAVHTGVSKV 410
K TRA+R ++A+ Y + + ++ A A E+ K L VA +SD+GLCG +H+ +S++
Sbjct: 60 TKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRL 118
Query: 411 IRNRLNEPGA-ENIKVICVGDKSRSILQR 494
IR L++P EN + +G+K R+ L R
Sbjct: 119 IRRELHDPKTFENTSLCILGEKVRTQLLR 147
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 31.5 bits (68), Expect = 0.078
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 60 KAVKMLSRVAPGVCTQAVAVVNHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 239
K + LS C +AV + +N KAI I K VKNI T ++++
Sbjct: 1045 KRIYSLSADMVKACDEAVERLGADDTKNKQPRKAILIEFKGVKNINAETVTLRVKDLTHL 1104
Query: 240 TRAERDL 260
RA + L
Sbjct: 1105 HRAYKGL 1111
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 410 HLRDTGVDSTTQSSVRGHSDVE 345
HL +T D +T SSVRG+ V+
Sbjct: 241 HLHNTWEDYSTLSSVRGYKKVD 262
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.55
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 412 SATGSTNPELRISRLSASETSPAASCNVSTANTSS 516
SATGS+ + + +S S TS A+ + + ++TSS
Sbjct: 969 SATGSSTSSIATASVSGSSTSSVATASATDSSTSS 1003
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 412 SATGSTNPELRISRLSASETSPAASCNVSTANTSS 516
SAT S+ + + ++ S TS A+ +V+ ++TSS
Sbjct: 995 SATDSSTSSIAAASVTGSSTSSVATASVTDSSTSS 1029
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 412 SATGSTNPELRISRLSASETSPAASCNVSTANTSS 516
SAT S+ + ++ ++ S TS A+ + + ++TSS
Sbjct: 1034 SATDSSTSSIAVASVTGSSTSSVATASATDSSTSS 1068
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 412 SATGSTNPELRISRLSASETSPAASCNVSTANTSS 516
S TGS+ + + ++ S TS A+ + + ++TSS
Sbjct: 1008 SVTGSSTSSVATASVTDSSTSSVATASATDSSTSS 1042
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 372 GLCGAVHTGVSKVIRNRLNEPGAENIKVICVGDKSRSILQRLYS 503
G+ GA+ TGV +N L E GA ++ +IC +L +YS
Sbjct: 92 GIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMVLMTVYS 134
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 0.96
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 424 STNPELRISRLSASETSPAASCNVSTANTSS 516
S+NPEL S L A SPA N + N SS
Sbjct: 267 SSNPELSNSNLLAKNESPADVSNNESGNESS 297
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 405 KVIRNR-LNEPGAENIKVICVGDKSRSILQR 494
K++R++ LN G E + ++ VG+KS +QR
Sbjct: 97 KIVRDKILNHTGTEWVPIVVVGNKSDLHMQR 127
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 164 DGFKCGHIPVLLVVDHRHRLGAYTRCDTTQHFHGFFQ 54
D F + V + H + +++CD TQ FH F Q
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQ 290
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 419 VADHLRDTGVDSTTQSSVRGHSDVELLRVILKGDYLSPFVE 297
+A LRD GVD SS H D R+ +K Y PF E
Sbjct: 282 LAARLRDGGVDLIDVSSGGNHKD---QRIEVKDCYQVPFAE 319
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 136 FCWWLTTATAWVHTPGATRLNIFTAFFRRF*LKYTSRRNMSLAL 5
FC +L T W A +N ++F R L++ SL+L
Sbjct: 555 FCIFLAGVTEWAKGLDAAAINNSSSFLRHLFLRFDKSMTGSLSL 598
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 388 STPVSRR*SATGSTNPELRISRLSASETSPAASCNVSTANTSS 516
STP+S +++ S++ +S SAS + +S + T + SS
Sbjct: 164 STPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASS 206
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 88 HRVYAPKRWRWSTTSRTGIWPHLKPSPFVSSL*RIF 195
H+VY R W T G +P+LK + V L R+F
Sbjct: 281 HQVYP--RGNWVFTCLNGYYPYLKLTLLVGFLFRLF 314
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 177 KSVKNIQKITQSMKMVSAAKYTRAERDLK 263
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 157 LSVAIFLFCWWLTTATAWVHTP 92
+S++I+ F +WLT +W+ P
Sbjct: 115 VSLSIWRFLYWLTFVLSWIILP 136
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 389 PHRCLEG-DPQPAQRTRS*EYQGYLRRRQVPQHLATSLQ 502
P+ C + + A++TR + Q Y R R++ Q + TSLQ
Sbjct: 230 PYVCFRRREIRQARKTRRSDAQSYDRLRRLRQSMETSLQ 268
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 445 ISRLSASETSPAASCNVSTANTSSA 519
+S + +S TS AAS +S+A +SSA
Sbjct: 260 VSSVVSSATSVAASSTISSATSSSA 284
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 327 EDDPKQLYVAMTSDRGLCGAVHT--GVS 404
+ +P L VA+ SDR CG+++ GVS
Sbjct: 876 KQNPYDLLVALDSDRKACGSLYVDDGVS 903
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,628
Number of Sequences: 5004
Number of extensions: 43504
Number of successful extensions: 137
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -