Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F08
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 398 CLEGDPQPAQRTRS*EYQGYLRRRQVPQHLATS 496
           C+   P P Q   S +  G  RRR+ P++ + S
Sbjct: 389 CVACSPPPRQTPPSRKESGRRRRRRTPRYNSVS 421


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 443 EYQGYLRRRQVPQHLATSLQQ 505
           E++ YLR R   QH+    QQ
Sbjct: 8   EFRRYLRNRNQLQHVLEETQQ 28


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 80  SCRTGCMHPSGGGGQPPAEQEYGHT*SHLH 169
           +C +  ++PS  G  PP+   + H  S  H
Sbjct: 298 ACHSPGVYPSTAGFLPPSYHPHQHHPSQYH 327


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 412 SATGSTNPELRISRLSASETSP 477
           S+TGS+ P+L +S    S+  P
Sbjct: 361 SSTGSSIPKLNLSTALMSQPPP 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,158
Number of Sequences: 438
Number of extensions: 3074
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)