Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F07
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    27   1.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   2.9  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   2.9  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   3.8  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   5.0  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    24   6.7  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    24   8.8  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +2

Query: 62  KISKNSISVTSSIGIRSTLGA*AVRRTAPLTHLWVFARLSNLE*VFIQFVAFIVSLTDLC 241
           K    S+ + +S+    T  A    R     +  +F  L N++ + IQF AFI +L  L 
Sbjct: 78  KSKAESLRIRNSLATLQTFLAELSVRKPTDVNFTIFLLLGNIDSIDIQFSAFIKNLCQLV 137

Query: 242 NYNFNLSPINTCIPF 286
             + ++  +   + F
Sbjct: 138 KDSEDVQSVEISLRF 152


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 67   IEKFNFGNVLHRYSKHVRCLGRPPHRATDT 156
            +EK     V+H      RC  +PP  A DT
Sbjct: 1509 VEKACSETVIHEIPGITRCFSKPPDSALDT 1538


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 152 SVARCGGRPRHLTCFEYRWRTLPKLN 75
           S+AR     RHL C +  WR L +L+
Sbjct: 262 SMARTIQTARHLNCQKLEWRALDELD 287


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = +3

Query: 234 TCVITTLIYLRLTRVFRS----EVLCLLKSVSFNF 326
           +C +T ++YL +  +F S    E+  L++++S+NF
Sbjct: 258 SCAVTDVLYLSIKGLFSSSTCLELYELIRNISWNF 292


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 189 SKFERRAKTHKCVSGAVRRTA*APNVLRIPMEDVTEIE 76
           SKFE   +  K +     R+  A   LR+ +ED+ +IE
Sbjct: 474 SKFEAVNQLKKFLGSLGNRSLNAREPLRVTLEDIEQIE 511


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 22  LNPRLRGDTTAAQKNIEKFNFGNVLHRYSKH 114
           L P LRG+  A      K+N   + H YS +
Sbjct: 75  LCPMLRGENRACPNAYMKYNRSLIYHGYSSY 105


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 4   RGRAPHLNPRLR-GDTTAAQKNIEKF 78
           R R   + PR R GD++A QK ++KF
Sbjct: 160 RQRIDQVIPRKRRGDSSAYQKGLDKF 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,760
Number of Sequences: 5004
Number of extensions: 27710
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)