Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F07
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174... 31 0.29
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 28 2.0
05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201... 28 2.7
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 27 3.6
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 26 8.2
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 26 8.2
04_03_0113 + 11388585-11388655,11388741-11388852,11390182-113902... 26 8.2
>08_01_0217 +
1738321-1739104,1739683-1739915,1740002-1740292,
1740524-1740616,1740912-1741040,1741522-1741695,
1741883-1741990,1742073-1742279
Length = 672
Score = 31.1 bits (67), Expect = 0.29
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +1
Query: 10 RAPHLNPRLRGDTTAAQKNIEKFNFGNVLHRYSKHVRCLGRPPHRATDTFVGF 168
R HLNPRLRGD +Q+ I + N + ++ RC G PP D GF
Sbjct: 216 RILHLNPRLRGDW--SQRPIIEHNTCYRM-QWGSAQRCDGSPPEDNDDKVDGF 265
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 40 GDTTAAQKNIEKFNFGNVLHRYSKHVRCLGRPPHRATDTFVGFRAPFEFRIG 195
G++ +N++ NF ++ C P HR T T VGF F++R G
Sbjct: 95 GNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHRPTAT-VGFE--FDWRSG 143
>05_03_0603 -
16117695-16118396,16118679-16118939,16120100-16120144,
16120362-16120453,16120568-16120706,16121027-16121063,
16121147-16121434,16122000-16122074,16122505-16122581,
16123092-16123256,16123387-16123543,16124558-16124733,
16124828-16124940,16125398-16125428,16126487-16126605,
16126696-16126789,16127384-16127458,16127548-16127666,
16127751-16127907,16129252-16129398
Length = 1022
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 119 LTCFEYRWRTLPKLNFSIFFWAAVVS 42
LTC YR RT K ++ I F VVS
Sbjct: 554 LTCLAYRHRTYSKASYQILFPRIVVS 579
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 53 LPKKISKNSISVTSSIGIRSTLG 121
LPK I+K ++ SSIGIR ++G
Sbjct: 891 LPKSITKIHLNSKSSIGIRGSIG 913
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 28 PRLRGDTTAAQKNIEKFNFGNVLHRYSKHVRC-LGRPPHRATDTFVGFR 171
PR+ +TAA+ N KF+ + YS + C L +A D G R
Sbjct: 2194 PRVESFSTAAKSNGPKFSLTETITFYSNELNCPLNVTLEKAMDANSGAR 2242
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +1
Query: 91 VLHRYSKHVRCLGRPPHRATDTF-VGFRAPF------EFRIGFYSICCL 216
V++ + KHV +G+P H D +G +A F E R+ S+ C+
Sbjct: 191 VIYNHDKHVDKIGKPCHGPMDNMAIGTKAMFAPYISDELRLQIMSLLCV 239
>04_03_0113 +
11388585-11388655,11388741-11388852,11390182-11390235,
11390386-11390456,11390560-11390641,11390741-11390837,
11390914-11391053
Length = 208
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 252 LIYLRLTRVFRSEVLCLLKSVSFNFSLDF 338
LIY+ L + SE CL +NFS DF
Sbjct: 121 LIYIALPYMKASEKYCLRMPNKWNFSFDF 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,300,186
Number of Sequences: 37544
Number of extensions: 170975
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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