Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F07
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.2  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   1.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              20   8.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 349 HHFIKSKEKLNDTDFKRHNTSERNTR 272
           HH  +  EKLN  + +  N+ E N +
Sbjct: 66  HHCNQDTEKLNQLEIESDNSKEVNDK 91


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 297 CLLKSVSFNFSLDFIK*WK*RG 362
           C+L S S+N  +DF+  +K  G
Sbjct: 114 CILSSESYNPQVDFVADYKIEG 135


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 331 KEKLNDTDFKRHNTSERNTRVN 266
           KEK N+ DFK   T + N   N
Sbjct: 517 KEKENEIDFKIEVTEDCNKSFN 538


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 336 NPRKN*TIQTSKGTILQNGIHVLIGDKLKL*LHKSVRETMKA 211
           +P  +  +  S G I ++G H   GD  K+  H+ V  T  A
Sbjct: 686 DPNTHFQVNQSHG-IKRSGSHSWEGDSFKVSKHEEVSRTSTA 726


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 53  LPKKISKNSISVTSSIGIRSTLGA*AVRRTAPLTHLWV 166
           +P KIS  +      +G R+TL     R   PL+  W+
Sbjct: 609 VPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSISWL 646


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  LNPRLRGDTTAAQKNIEKFNFGNV 93
           L P   G+T  +QK I++   GNV
Sbjct: 29  LQPICVGETGTSQKIIDEVYNGNV 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,767
Number of Sequences: 438
Number of extensions: 2319
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)