Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F04
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   4.0  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   5.2  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    24   9.1  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    24   9.1  

>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 52  FLPLVYDHLVRCKITFFSVSV 114
           +LP+ Y+H+V C ++ F +S+
Sbjct: 517 YLPVKYEHVVFCNLSEFQLSL 537


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 250 TTNNECSWNMCVQWRCEGRPPVTASTSAGLGAD 348
           T  N CS N+ V W  E  P  T   +   G D
Sbjct: 229 TYPNTCSGNIIVSWLQENLPVPTLVAAEAFGQD 261


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 362 TNVVLSAPSPADVEAVTGGRPSQRHCTHIFHEHSLFVV 249
           +NV+++A S  +  +   GRPS R  +  + EH LF++
Sbjct: 176 SNVIMAADSKHNYSS---GRPSIRLQSTQYFEHGLFIL 210


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 299 KDARRLQLPRRLGWGQTT 352
           K+  RL +PRR  W QTT
Sbjct: 103 KNKDRLTIPRRPHWDQTT 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,248
Number of Sequences: 5004
Number of extensions: 31781
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)