Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F04
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22...    28   2.9  
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916...    28   3.9  
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773...    27   6.8  
04_01_0557 + 7168446-7168998,7169107-7169141                           27   6.8  
02_02_0643 + 12590928-12592172,12592609-12592698                       27   6.8  
01_01_0260 - 2110026-2110447,2110510-2110651                           27   9.0  

>08_01_0030 +
           222748-222829,223224-223448,223800-224204,224773-225389
          Length = 442

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 173 CDICIRPSKFGTAAPPRAHTTLTLKNVI 90
           C +C R +  GT+ PP + +T  L +VI
Sbjct: 255 CPVCKRDASAGTSKPPASESTPLLSSVI 282


>08_02_0785 +
           21190002-21190253,21190452-21190523,21191498-21191631,
           21191700-21191850,21191938-21192087
          Length = 252

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 173 CDICIRPSKFGTAAPPRAH 117
           C+IC  P K G  A PRAH
Sbjct: 103 CEICHEPYKHGYTALPRAH 121


>08_02_1237 + 25475219-25475916,25476127-25476320,25476407-25477302,
            25477416-25477490,25477582-25477689,25477780-25477897,
            25478007-25478142,25478228-25478372,25478460-25479080,
            25479166-25479597
          Length = 1140

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +2

Query: 116  CA-LEAGL---PSRTYSVLCR-YHNRLLVVI*YIMCVCVFM-CIYSFTAG 247
            CA L+AGL   P  +  +L R Y + +L +    +CVCVFM  +  F +G
Sbjct: 1078 CAILDAGLLRRPMHSRGLLARPYIHSMLAIAAVCVCVCVFMRALLRFNSG 1127


>04_01_0557 + 7168446-7168998,7169107-7169141
          Length = 195

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 351 VVCP-QPSRRGSCNRRASFAA 292
           ++CP QP+RRG CNR     A
Sbjct: 69  LICPAQPARRGVCNRGPQLVA 89


>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 198 ILCVCACLCVYIV-SLRDHNKQ*VFMEYVRAVALRRTP 308
           +L +C   CV +  SLR++N    F+ +++AV L  TP
Sbjct: 111 LLNLCTGECVLLPRSLRNNNPDTTFINHIQAVILSYTP 148


>01_01_0260 - 2110026-2110447,2110510-2110651
          Length = 187

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 357 RGVVCPQPSRRGSC 316
           RG +CPQ S RGSC
Sbjct: 23  RGPMCPQHSSRGSC 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,941
Number of Sequences: 37544
Number of extensions: 246492
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)