Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F04
         (445 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens ...    26   3.5  
AK125003-1|BAC86021.1|  149|Homo sapiens protein ( Homo sapiens ...    29   9.6  

>AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41637 fis, clone FEBRA1000030, weakly  similar
           to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 207

 Score = 26.2 bits (55), Expect(2) = 3.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 229 YTHKHAHTHNILY 191
           +TH H HTH +LY
Sbjct: 78  HTHTHTHTHAVLY 90



 Score = 22.6 bits (46), Expect(2) = 3.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 268 NTHCLL*SRSETIYTHKHAHTH 203
           +TH L      ++Y H H HTH
Sbjct: 61  HTHTLSLYWLISLYIHTHTHTH 82


>AK125003-1|BAC86021.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43013 fis, clone BRTHA2016215. ).
          Length = 149

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 201 LCVCACLCVYIVSLRDHNK 257
           +CVC C+CVY+     H K
Sbjct: 86  VCVCVCVCVYVCMRLAHGK 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,250,645
Number of Sequences: 237096
Number of extensions: 1332879
Number of successful extensions: 3469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3401
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)