Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F04
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL110477-6|CAB54330.1|  265|Caenorhabditis elegans Hypothetical ...    28   2.7  
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p...    27   4.6  
Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical pr...    27   6.1  
L23645-10|AAK26135.2|  300|Caenorhabditis elegans Hypothetical p...    27   6.1  
Z81583-6|CAB04674.1|  397|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical
           protein F09F3.1 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 22  RNLSSLWRVLFLPLVYDHLVRCKITFFSVSVVCA 123
           + L+   ++ F+  + + +V C   FF+V V+CA
Sbjct: 48  KTLNGFKKLCFMKTIANSIVCCSFLFFAVPVICA 81


>AL110477-6|CAB54330.1|  265|Caenorhabditis elegans Hypothetical
           protein Y113G7B.8 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 290 HCTHIFHEHSL 258
           HC HIFHEHS+
Sbjct: 89  HCMHIFHEHSV 99


>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
            protein F46F11.1a protein.
          Length = 1339

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 356  VVLSAPSPADVEAVTGGRPSQRH--CTHIFHEHSLFVVI 246
            +V+  P P+   AV     S+R   C  IFH   LFV +
Sbjct: 1134 IVIPTPVPSTTTAVVEDEASERQSRCDIIFHHKKLFVFL 1172


>Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical
           protein R05D7.5 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 241 CGITTNNECSWNMCVQWRCEGRPPVTASTSAGLGADNTTL 360
           CG       +W++C+    E   P+  +  +G G ++TT+
Sbjct: 68  CGAIVTILVTWHVCLTSETEDFIPINMTEGSGSGQEDTTI 107


>L23645-10|AAK26135.2|  300|Caenorhabditis elegans Hypothetical
           protein F54F2.9 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 147 VRDGSPASSAHDTNTKKRYFAANEVVIDK 61
           V  G  A S +D   +K+Y A NEVV  K
Sbjct: 134 VAQGMKAVSTNDPEMEKKYAAENEVVAQK 162


>Z81583-6|CAB04674.1|  397|Caenorhabditis elegans Hypothetical
           protein T02G6.6 protein.
          Length = 397

 Score = 24.6 bits (51), Expect(2) = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 195 NILCVCACLCV 227
           ++LC+C C+C+
Sbjct: 90  SVLCICICICI 100



 Score = 20.6 bits (41), Expect(2) = 7.1
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 201 LCVCACLCVYIVSLRD 248
           +C+C C+  Y V   D
Sbjct: 94  ICICICIVKYTVDNLD 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,114,349
Number of Sequences: 27780
Number of extensions: 197832
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)