Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F03
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 36 0.003
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 30 0.23
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 29 0.30
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.53
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.53
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 28 0.92
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 1.6
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 2.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 3.7
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 3.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.7
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 25 4.9
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 4.9
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 8.6
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 8.6
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 281 LRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKTK 460
L I ++ ++ EC + T+ E+ +++K+ND + K++LL T +T+
Sbjct: 381 LNDYITKLQNEIDECRRNLLWAESSCETIREENQKNIKKLNDAESLKSRLLQSRTQMQTE 440
Query: 461 L 463
L
Sbjct: 441 L 441
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 29.9 bits (64), Expect = 0.23
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 278 ELRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKT 457
+L + E+ ++L E KQQ ++ L+ +RD ++D+ Q+ L E Y T
Sbjct: 178 KLSDKFVEIRSELDEVRKQQDGYYKDQRKLIAERDDEKTALDDLYNQRRALQRE---YDT 234
Query: 458 KL 463
+L
Sbjct: 235 QL 236
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 29.5 bits (63), Expect = 0.30
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 278 ELRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKT 457
EL+ I+ + Q +E Q CM E ++ D+H+ K K++ + L DY
Sbjct: 56 ELQNEISSLLKQDKELDLQIQDCMREMTSIY---DTHLPKTVSGRKRQKVNAETLLDYGR 112
Query: 458 KLSK 469
KLSK
Sbjct: 113 KLSK 116
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 28.7 bits (61), Expect = 0.53
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 281 LRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKT 457
L++ IA Q +E S+ + MEE L + EQ + D+DK LL+ LT K+
Sbjct: 215 LKEAIASEKLQQEERSQIIKSLMEEELEINEQEEKIKHSFIDLDK---TLLNNLTKSKS 270
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.7 bits (61), Expect = 0.53
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 284 RKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLD 436
+ ++ ++ QLQE + T ++ TLL + + RK++++ +Q K D
Sbjct: 1824 QSQLLSLTAQLQEVREANQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFD 1874
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 0.92
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +2
Query: 293 IAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKTKLSKS 472
++ TQL++C KQ + + L EQ + + K D++K+ ++ L + L+ S
Sbjct: 484 VSRAKTQLEKCKKQAKSQQKSLPYLEEQYEKYRAKAADLEKEFSESTTLLKRDLSSLTTS 543
Query: 473 DVQVNNTRVDVE 508
+V++ + VE
Sbjct: 544 --RVDDLKASVE 553
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/67 (23%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +2
Query: 293 IAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDEL-TDYKTKLSK 469
I E+ TQ ++ K +T +++ + L +R+ +++ + K K L E+ +Y+T++ +
Sbjct: 317 INEIQTQNRDL-KLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKE 375
Query: 470 SDVQVNN 490
+ ++NN
Sbjct: 376 ARQKLNN 382
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 2.8
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = +2
Query: 272 ETELRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDY 451
E L+KRI ++ + Q +Q +EE L ++Q S V ND + +L + +T
Sbjct: 135 EKILQKRIEDLLYERQNHQQQ----LEEVLATVDQLQSLVTNFNDQQDEVDELRERITLK 190
Query: 452 KTKLSKSDVQVNNTRVD 502
+ ++ + + + R +
Sbjct: 191 EERIQQMRNEASQRRFE 207
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 272 ETELRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDE 439
+ +L+KR AE+ E KQQ + E L+E +S N + ++ LD+
Sbjct: 823 DKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIALDK 878
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 338 FVALNTLVIVYSLLRFFSVILFPNSNYLEVKVLTKCKQRK*CTSAND 198
F+A+N + + L+ F +IL + VK+ CK K +S D
Sbjct: 689 FMAINAQMQTFLLVFFTDIILGVKDDLQLVKIFENCKAEKNLSSKVD 735
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 202 LADVHYFRCLHFVSTFTSK*LEFG---NRITEKNRRSEYTITRVFKATNNL 345
L YF CLHF+ + L FG N+++++ R E ++ + + +
Sbjct: 3079 LGKTSYFSCLHFIRFLNTFCLIFGRDANKLSKEKSRIENGFKKIKETSQGI 3129
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 4.9
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Frame = +2
Query: 182 GIENMRRWPMYIIFAAC---IXXXXXXXXXXXXETELRKRIAEVSTQLQECSKQQTTCME 352
G+ N R+ ++ IF I T++RK +VS LQE T
Sbjct: 569 GLANARKSALHEIFVKINLKIDDFLGLAEYDWTTTQVRK---DVSGYLQEMVTYLQTMYL 625
Query: 353 ESLTLLEQRDSHVRKINDMDKQKTKLLDELTD 448
ESL L + D + +D T ++D L+D
Sbjct: 626 ESLAGLPKHDKSYVYLETLDHLCTAMVDLLSD 657
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 4.9
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = +2
Query: 287 KRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKTKLS 466
K+ EV Q+ S+ +E S ++Q S V Q LDE+T L
Sbjct: 590 KQKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLD 649
Query: 467 KSDVQVNNTRVDVE 508
+ V+ ++D+E
Sbjct: 650 EESKAVSQRKLDLE 663
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 351 KNLSRYLNKEIAMSEK 398
K+LS YL+KE+A +EK
Sbjct: 427 KDLSTYLSKELASTEK 442
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 187 RKHASLADVHYFRCLHFVSTFTSK*LEFGNRITEKNRRSEYTITRVFKA 333
RK + +C+H V F +E NR+ SE T+++KA
Sbjct: 502 RKCTECGITAHAQCVHLVPDFCGMSMEMANRVI-----SEIRTTKIYKA 545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,470
Number of Sequences: 5004
Number of extensions: 31730
Number of successful extensions: 129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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