Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F03
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0563 - 25651529-25651621,25651712-25651790,25651875-256519... 33 0.13
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 32 0.30
12_01_0365 + 2775020-2775259,2775388-2775465,2775576-2775641,277... 31 0.53
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 31 0.70
08_01_0601 - 5268520-5271112,5272448-5272950 29 1.6
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 2.1
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144... 29 2.8
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 3.7
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895... 28 3.7
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 28 3.7
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137... 27 6.5
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 27 6.5
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116... 27 6.5
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486... 27 8.7
05_04_0308 - 20081366-20082404,20082702-20083078,20084293-200846... 27 8.7
02_05_0102 + 25837039-25837115,25837526-25837664,25837918-258379... 27 8.7
>03_05_0563 -
25651529-25651621,25651712-25651790,25651875-25651920,
25652001-25652264,25652361-25652484,25652727-25652780,
25653589-25653657,25653752-25654021
Length = 332
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +2
Query: 278 ELRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKT 457
ELR+R+A + LQE + + +E+++ L ++RDS + K+ + L +L +K
Sbjct: 64 ELRERVALLDRALQETNSRLRAALEDNIKLSKERDS----LAQTSKKLARDLQKLESFKR 119
Query: 458 KLSKS 472
L +S
Sbjct: 120 HLMQS 124
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +2
Query: 296 AEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKTKLSKSD 475
AE+ S+ + C + L E++DS +++ D+QK KL +++ + KTK+++ D
Sbjct: 413 AEMEAAKLSASESERQC--QKLVKKEKKDS--KRLEMWDRQKAKLQEDIAECKTKITQVD 468
>12_01_0365 +
2775020-2775259,2775388-2775465,2775576-2775641,
2775736-2775834
Length = 160
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +2
Query: 278 ELRKRIAEVSTQLQECSKQQTTCMEESLTLLE 373
EL +++A++STQ + K++ T M+E L+L E
Sbjct: 111 ELARKVADLSTQNESMKKERETVMQEYLSLKE 142
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 30.7 bits (66), Expect = 0.70
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 353 ESLTLLEQRDSHVRKINDMDKQKTKLLDE---LTDYKTKLSKSDVQVNNT 493
+S L Q+D H++ I+ MD+ KLL E L D K+ + ++ +T
Sbjct: 585 DSERLRSQKDKHIKDIDGMDEDLKKLLKEQRQLEDEAAKIRRKKEEITDT 634
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Frame = +2
Query: 278 ELRKRIAEVSTQLQECSKQQTTCMEE----------SLTLLEQRDSHVRKINDMDKQKTK 427
++ KRI ++ Q +EC+ ++ C + SLT LE D+ V KI D D+ K
Sbjct: 134 DINKRIEQMKQQRKECNLEKLPCASKPHRKKYTDWSSLTELEIEDNLV-KIGDYDEIKRL 192
Query: 428 LLDE 439
+LD+
Sbjct: 193 VLDQ 196
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +2
Query: 281 LRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKTK 460
L+K +AE+++ QQ E+ ++ LE + VR + QKT++LD+ ++K K
Sbjct: 847 LKKTVAELNSMKDSALLQQQKSSEK-VSYLEAQVLVVRSEMEKMVQKTQMLDQELEHKNK 905
>01_01_0171 +
1446221-1446902,1447040-1447221,1447339-1447409,
1447480-1447486,1447530-1447619,1447694-1447981,
1448121-1448333,1448860-1449087
Length = 586
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +2
Query: 272 ETELRKR-IAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMD-KQKTKLLDELT 445
+ E++KR + E+ +Q E + ME+ L+ + +RK+ D+ + +++DE
Sbjct: 189 QVEVKKRHVEELESQYNETTASLERVMEQREQQLQAYNEEIRKMQDLALRHSQRIMDENK 248
Query: 446 DYKTKLSKSDVQVNNTR 496
++ L +S +Q+ ++R
Sbjct: 249 KLRSDL-ESKMQLLDSR 264
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 359 LTLLEQRDSHVRKINDMDKQKTKLLDELTD 448
L L+ Q+D V+++ND KQK+ L E T+
Sbjct: 982 LDLMRQKDCTVQELNDNVKQKSCLFAEATE 1011
>06_03_0152 +
17287133-17287490,17288541-17288734,17289349-17289557,
17289640-17289742,17290128-17290291,17290554-17290692,
17290908-17291078,17291162-17291298,17291445-17291759,
17291906-17291965,17292372-17292511,17292691-17292788,
17292875-17293387
Length = 866
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/46 (23%), Positives = 27/46 (58%)
Frame = +2
Query: 272 ETELRKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDM 409
++++ + + E + + K++ E +++LE +SH+R +NDM
Sbjct: 180 QSKVLEEVKEELSAEELFEKKKAQLAEIGMSMLEDPESHIRSLNDM 225
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 353 ESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYK 454
E + ++ D+ RK+++M K K++ ELT+ K
Sbjct: 223 EKINIIASLDAENRKLSEMLSMKEKMISELTEAK 256
>11_01_0170 -
1373986-1374013,1374061-1374326,1374693-1374926,
1375034-1375171,1375255-1375557,1376008-1376172,
1376469-1376933
Length = 532
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 404 DMDKQKTKLLDELTDYKTKLSKSDVQVNNTRVDV 505
D D +L ++T+Y TKL +S + R D+
Sbjct: 290 DFDPDSAELSPDITEYTTKLKQSHERARKLRADL 323
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 287 KRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKTKLS 466
+R A + L+EC KQ T EES L+ D K + K +L +L ++ +L
Sbjct: 123 ERAAHLDGALKECMKQVRTVKEESEQKLQ--DVVFAKTKQWEMMKAELEAKLASFEHELI 180
Query: 467 KSDVQ 481
++ +
Sbjct: 181 RAGAE 185
>03_01_0146 -
1161005-1161133,1161239-1161283,1161369-1161469,
1161585-1161691,1161823-1161924,1162028-1162250,
1162343-1162382
Length = 248
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 284 RKRIAEVSTQLQECSKQQTTCMEESLTLLEQRDSHVRKINDMDKQKTKLLDELTDYKTKL 463
R I E +L + + + +L + E+ D H R I+D+D++ + ++L + KL
Sbjct: 153 RNVIKEQDDELDKLEETIVSTKHIALAINEELDLHTRLIDDLDEKTEETSNQLQRAQKKL 212
>12_02_0483 +
19546295-19546397,19547163-19547482,19547606-19548611,
19549890-19549985,19550500-19551551
Length = 858
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 371 EQRDSHVRKINDMDKQKTKLLDELTDYKTKLSKSDVQVNN 490
E+R KIND+ +++ EL D K K+ ++Q N+
Sbjct: 386 EERTKRKLKINDLFQEQNYTKKELRDLKGKIRSLELQNNS 425
>05_04_0308 -
20081366-20082404,20082702-20083078,20084293-20084679,
20085038-20086000
Length = 921
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 371 EQRDSHVRKINDMDKQKTKLLDELTDYKTKLSKSDVQVNN 490
E+R KIND+ +++ EL D K K+ ++Q N+
Sbjct: 388 EERTKRKLKINDLFQEQNYTKKELKDLKGKIRSLELQNNS 427
>02_05_0102 +
25837039-25837115,25837526-25837664,25837918-25837982,
25838061-25838271,25838865-25839212
Length = 279
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 344 KLFVALN--TLVIVYSLLRFFSVILFPNSNYLEVKVLTKCKQRK 219
K +A N TLV+ FFS +L P +Y V+ KC K
Sbjct: 109 KYILACNSMTLVVTPKYYDFFSRVLMPTQHYWPVRDDNKCSSIK 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,310,609
Number of Sequences: 37544
Number of extensions: 160066
Number of successful extensions: 408
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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