Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F02
         (361 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4R9R9 Cluster: Chromosome undetermined SCAF25433, whol...    34   0.65 
UniRef50_P39479 Cluster: Quinol oxidase subunit 2 (EC 1.10.3.-) ...    33   1.1  
UniRef50_Q21K39 Cluster: Helicase-like protein; n=1; Saccharopha...    31   8.0  
UniRef50_A7AMZ0 Cluster: Protein kinase domain containing protei...    31   8.0  

>UniRef50_Q4R9R9 Cluster: Chromosome undetermined SCAF25433, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF25433,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 341

 Score = 34.3 bits (75), Expect = 0.65
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -3

Query: 338 ILYRTHRRDIPDEVDRGVCGTHPAQKVPRIPTIPPGTSRHLFINPLLCVSL 186
           I++   RRD    +D    GT PA+  P  P  PPG  +HLF   +  +SL
Sbjct: 222 IVFTQKRRDQMTSLDTEKVGTLPARPRPPGPPGPPGPLKHLFCPQVSKISL 272


>UniRef50_P39479 Cluster: Quinol oxidase subunit 2 (EC 1.10.3.-)
           (Quinol oxidase polypeptide II) (Cytochrome aa3 subunit
           2) (Oxidase aa(3) subunit 2); n=5; Sulfolobaceae|Rep:
           Quinol oxidase subunit 2 (EC 1.10.3.-) (Quinol oxidase
           polypeptide II) (Cytochrome aa3 subunit 2) (Oxidase
           aa(3) subunit 2) - Sulfolobus acidocaldarius
          Length = 168

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 247 PLYLPGPPATYS*IPYFVSHSPSPILYRHIYNDMIIV--FTTPYSVWPDI 104
           P Y   P      + YF SH PSP  Y  + N M++V    T Y   PD+
Sbjct: 43  PTYSGLPEQAQKAVQYFDSHPPSPGQYSEVINGMLVVNLTATQYKWTPDL 92


>UniRef50_Q21K39 Cluster: Helicase-like protein; n=1; Saccharophagus
           degradans 2-40|Rep: Helicase-like protein -
           Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
           17024)
          Length = 874

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 225 GGPGRYSGYSRHLLCRVSPTHPSI--DFIGDISPVGTIEDVRKCIP 356
           G  GR   +S HL+C   P HP +    IG +  +G   DV   +P
Sbjct: 478 GSEGRNFQFSSHLICLDLPDHPELLEQRIGRLDRIGQKNDVSVHVP 523


>UniRef50_A7AMZ0 Cluster: Protein kinase domain containing protein;
           n=1; Babesia bovis|Rep: Protein kinase domain containing
           protein - Babesia bovis
          Length = 473

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 284 CGTHPAQKVPRIPTIPPGTSRH 219
           CG+HPAQ VP   T+P   S++
Sbjct: 125 CGSHPAQHVPGADTLPEAESKY 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,935,397
Number of Sequences: 1657284
Number of extensions: 8457101
Number of successful extensions: 20723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20715
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12367962079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)