Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F02
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    26   2.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   2.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   4.7  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    24   8.2  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    24   8.2  

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 193 SHSPSPILYRHIYNDM 146
           S  PSP L +H+YND+
Sbjct: 197 STRPSPTLAKHVYNDL 212


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
 Frame = -2

Query: 207 SPTLCL---THPALFYIDIFITI 148
           SPT+C+   +  ALFY+ +FIT+
Sbjct: 733 SPTMCMLSISFEALFYVVLFITL 755


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -1

Query: 313  ISPMKS-IEGCVGLTRHRR---CREYPLYLPGPPATYS*IPYFVS 191
            +SP K  +EG +G   H     C ++ ++   PP  YS   YF S
Sbjct: 1271 LSPYKYFLEGMIGGVLHDAPITCEKFEIHYVDPPPNYSCGEYFSS 1315


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 TIPPGTSRHLFINP 204
           T+PP + RH F NP
Sbjct: 89  TVPPASGRHRFGNP 102


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 279 DSPGTEGAENTHYTSRDLPPPIHKSPTLCLTHP 181
           DS   +  E T +T R   PP   SP L   HP
Sbjct: 418 DSYSQKWQEQTGWTERFRLPPSRHSPHLTDIHP 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,300
Number of Sequences: 5004
Number of extensions: 33425
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)