Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F02
(361 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 27 4.4
11_01_0302 + 2261489-2261738,2261917-2262064,2262124-2262205,226... 27 4.4
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467... 27 4.4
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 27 5.9
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 27 5.9
02_01_0011 + 78277-78487,78594-79417 27 5.9
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540... 27 5.9
08_02_1325 - 26146775-26147247,26147397-26148579 26 7.7
07_03_0254 + 15857809-15858018,15858151-15858264,15859809-158600... 26 7.7
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 26 7.7
>11_01_0466 +
3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 290 GVCGTHPAQKVPRIPTIPPGTSRH-LFINPLLCVSLTQPYSI 168
G+CG P +P P +P S+H L++ + + L ++
Sbjct: 618 GLCGGAPELHLPECPIVPSNKSKHKLYVTLKVVIPLASTVTL 659
>11_01_0302 +
2261489-2261738,2261917-2262064,2262124-2262205,
2262501-2262566,2262609-2262686,2262794-2262808,
2263618-2263764
Length = 261
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 271 G*VPHTPLSTSSGISLRWVR*RMC 342
G TP +SGI+ RW R RMC
Sbjct: 23 GAAARTPSRLASGIAARWHRLRMC 46
>01_05_0132 -
18446105-18446197,18446281-18446372,18446684-18446783,
18446855-18447046,18447216-18447536,18447848-18447943,
18448006-18448098,18448181-18448306,18448358-18449053,
18449130-18449162
Length = 613
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 270 RVSPTHPSIDFIGDISPVGTIEDVRK 347
RVS HPSID+ G P+ DV+K
Sbjct: 247 RVSHIHPSIDYTGRDRPLIQYWDVKK 272
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 256 REYPLYLPGPPATYS*IPYFVSHSPSPILYRHI 158
R Y L LPG A + Y + H PSP L R +
Sbjct: 75 RMYTLPLPGLEAYLFQVCYMMVHKPSPSLDRFV 107
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -1
Query: 250 YPLYLPGPP-----ATYS*IPYFVSHSPSPIL 170
+ L+LP PP A S PY + H+PSP L
Sbjct: 871 FGLHLPPPPPRDPLAPMSNFPYSLGHAPSPAL 902
>02_01_0011 + 78277-78487,78594-79417
Length = 344
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 270 GTEGAENTHYTSRDLPPPIHKSPTLCLTHPALFYID 163
G++ NT++T R P H S L H A ++D
Sbjct: 156 GSDDVANTYFTMRARPGYDHASYAALLVHHAAAFVD 191
>01_05_0636 +
23852985-23853142,23853253-23853445,23853910-23854033,
23854285-23854637,23855525-23856530,23856892-23857085,
23857238-23857324
Length = 704
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 358 GGMHLRTSSIVPTGEISPMKSIEGCVGLTRH 266
GG H TS + TGE+S +S G + H
Sbjct: 523 GGSHSDTSRVTSTGEVSNEESETGHAAIKSH 553
>08_02_1325 - 26146775-26147247,26147397-26148579
Length = 551
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 252 SRHLLCRVSPT--HPSIDFIGDISPVGTIEDVRKCI 353
S H +VSP HP ++G + + ++D KCI
Sbjct: 469 SNHGSSQVSPKPPHPDAKYLGQVYSIPAMDDWSKCI 504
>07_03_0254 +
15857809-15858018,15858151-15858264,15859809-15860010,
15860245-15860319,15860406-15860498,15860554-15860636,
15861067-15861180,15861632-15861746,15861840-15862030,
15862102-15862218,15862514-15862594,15862729-15862964,
15863219-15863258,15863393-15863968
Length = 748
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 319 GEISPMKSIEGCVGLTRHRRCREYPLYLPGPPATY 215
GE+ K+ EG GL + C E LY G PA Y
Sbjct: 361 GEVFVGKA-EGSGGLLSYSTCAEQLLYEVGDPANY 394
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 308 PDEVDR-GVCGTHPAQKVPRIPTI 240
P DR GV GTH A K+ RIP +
Sbjct: 944 PFPCDRDGVLGTHQANKLRRIPAL 967
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,206
Number of Sequences: 37544
Number of extensions: 245831
Number of successful extensions: 646
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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