Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F02
         (361 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028355-1|AAH28355.1|  714|Homo sapiens Mdm4, transformed 3T3 c...    30   1.9  
AF007130-1|AAC19149.1|  253|Homo sapiens unknown protein.              30   1.9  
AK126029-1|BAC86401.1|  122|Homo sapiens protein ( Homo sapiens ...    30   2.5  
AK131430-1|BAD18577.1|  259|Homo sapiens protein ( Homo sapiens ...    29   5.7  
AY751317-1|AAV28671.1|   49|Homo sapiens T cell receptor beta ch...    28   7.6  

>BC028355-1|AAH28355.1|  714|Homo sapiens Mdm4, transformed 3T3 cell
           double minute 1, p53 binding protein (mouse) protein.
          Length = 714

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 320 RRDIPDEVDRGVCGTHPAQKVPRIPTIPPG 231
           R D  D + +    T P  K+P+ PT PPG
Sbjct: 598 REDSEDNIHKFAEATLPVSKIPKYPTNPPG 627


>AF007130-1|AAC19149.1|  253|Homo sapiens unknown protein.
          Length = 253

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 320 RRDIPDEVDRGVCGTHPAQKVPRIPTIPPG 231
           R D  D + +    T P  K+P+ PT PPG
Sbjct: 137 REDSEDNIHKFAEATLPVSKIPKYPTNPPG 166


>AK126029-1|BAC86401.1|  122|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44041 fis, clone TESTI4029370. ).
          Length = 122

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 193 SHSPSPILYRHIYNDMIIVFTTPYSVWP 110
           SHSP P  Y  IY   II  T  ++ WP
Sbjct: 72  SHSPKPFRYALIYEFTIIFKTNSWARWP 99


>AK131430-1|BAD18577.1|  259|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16555 fis, clone SPLEN2016781. ).
          Length = 259

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 314 DIPDEVDRGVCGTHPAQKVPRIPTIPPGTSRHLFINPLLCVSLTQ 180
           D P+E  +G+C        P  P +  G+SR+L ++PL  +S +Q
Sbjct: 124 DCPEEDKKGLCPAPKEPAGPGAPLLVVGSSRNL-LSPLSVMSASQ 167


>AY751317-1|AAV28671.1|   49|Homo sapiens T cell receptor beta chain
           protein.
          Length = 49

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 246 GYSRHLLCRVSPTHPSIDFIGDISPVGTIEDVRKCIPP 359
           G S    C  SP  P   F G  + +  +ED+ K  PP
Sbjct: 3   GDSAAYFCASSPKRPGQAFFGQGTRLTVVEDLNKVFPP 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,706,924
Number of Sequences: 237096
Number of extensions: 1358420
Number of successful extensions: 2601
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2601
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)