Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F02
(361 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine re... 31 0.32
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 29 1.3
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 27 3.0
U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine rece... 26 6.9
Z67755-4|CAA91757.1| 336|Caenorhabditis elegans Hypothetical pr... 26 9.1
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr... 26 9.1
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr... 26 9.1
L23110-1|AAA03544.1| 744|Caenorhabditis elegans BMP receptor pr... 26 9.1
AL031627-20|CAA20952.1| 325|Caenorhabditis elegans Hypothetical... 26 9.1
AF047651-12|AAN63460.1| 592|Caenorhabditis elegans Abnormal dau... 26 9.1
AF047651-10|AAC02726.1| 744|Caenorhabditis elegans Abnormal dau... 26 9.1
>AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine
receptor, class t protein27 protein.
Length = 319
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 160 IYNDMIIVFTTPYSVWPDIASIFI*QFILPNITKSYCDIPIG 35
IY ++FTTP + + F I PN+T Y ++P G
Sbjct: 161 IYGMYFVIFTTPIAFSSKHLTWFFNPLIFPNMTHEYTNLPHG 202
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 272 PAQKVPRIPTIPPGTSRHLFINPLLCVSLTQPYSI*TYL*RYDY 141
PA+ +P +P S H++ P+ S T YS TY +YD+
Sbjct: 304 PAKNQEVMPKMPAKKSEHIYDEPIHRTSTTNVYSS-TYERKYDF 346
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 292 EGCVGLTRHRRCREYPLYLPGPPATYS*IPYFVSHSPSP 176
+G G ++H Y + P PP+ + PY+ +PSP
Sbjct: 126 QGIPGPSQHPATPSYYIQHPPPPSMSNGAPYYPHMNPSP 164
>U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine
receptor, class t protein25 protein.
Length = 288
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 181 SPILYR--HIYNDMIIVFTTPYSVWPDIASIFI*QFILPNITKSYCDIPIG 35
+PI+Y ++ +F++ Y W F FI PN+T Y +IP G
Sbjct: 117 APIIYGLYFVFFTPTCMFSSRYYAW------FYDPFIFPNMTSQYTNIPHG 161
>Z67755-4|CAA91757.1| 336|Caenorhabditis elegans Hypothetical
protein F54F7.4 protein.
Length = 336
Score = 25.8 bits (54), Expect = 9.1
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = -1
Query: 361 TGGMHLRTSSIVPTGEISPMKSIEGCV----GLTRHRRCREYPLYLPGPPATYS*IPYFV 194
T H + + P + SIE CV GL H R +YP + Y PY+
Sbjct: 191 TEKQHAKIQNKHPRNYFTEPPSIECCVRENQGLPPHPRANQYPAHFCKAMVAYCEDPYWT 250
Query: 193 SHS-PSP 176
+ P P
Sbjct: 251 ERTVPLP 257
>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
ZK370.4b protein.
Length = 1353
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 320 RRDIPDEVDRGVCGTHPAQKVPRIPTIPPGTSRHLFINP 204
RR+ PD V R V T A + +IP + P + +NP
Sbjct: 1242 RREKPD-VSRAVSFTDLAAAMSKIPVVRPTLRHSMSLNP 1279
>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
ZK370.4a protein.
Length = 1342
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 320 RRDIPDEVDRGVCGTHPAQKVPRIPTIPPGTSRHLFINP 204
RR+ PD V R V T A + +IP + P + +NP
Sbjct: 1231 RREKPD-VSRAVSFTDLAAAMSKIPVVRPTLRHSMSLNP 1268
>L23110-1|AAA03544.1| 744|Caenorhabditis elegans BMP receptor
protein.
Length = 744
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 205 PYFVSHSPSPILYRHIYNDMIIV 137
PYF H PI++R I + I+V
Sbjct: 426 PYFFGHPKKPIIHRDIKSKNILV 448
>AL031627-20|CAA20952.1| 325|Caenorhabditis elegans Hypothetical
protein Y102A5C.32 protein.
Length = 325
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -1
Query: 256 REYPLYLPGPPATYS*IPYFVSHSPSPILYRHIYNDMIIVFTTPYS 119
R++P Y G +S +P+F + SP+LY +Y+ +++ T ++
Sbjct: 168 RDFPDYYAG----FSTVPHFAIYLDSPLLY-SVYSVVLLTMGTIFA 208
>AF047651-12|AAN63460.1| 592|Caenorhabditis elegans Abnormal dauer
formation protein4, isoform c protein.
Length = 592
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 205 PYFVSHSPSPILYRHIYNDMIIV 137
PYF H PI++R I + I+V
Sbjct: 274 PYFFGHPKKPIIHRDIKSKNILV 296
>AF047651-10|AAC02726.1| 744|Caenorhabditis elegans Abnormal dauer
formation protein4, isoform a protein.
Length = 744
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 205 PYFVSHSPSPILYRHIYNDMIIV 137
PYF H PI++R I + I+V
Sbjct: 426 PYFFGHPKKPIIHRDIKSKNILV 448
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,914,012
Number of Sequences: 27780
Number of extensions: 193851
Number of successful extensions: 465
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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