Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F01
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    28   0.64 
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   2.6  
SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1 |Schizosac...    26   3.4  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    26   3.4  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   3.4  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    25   5.9  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   5.9  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   5.9  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 204 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFD 94
           +Y  + + A H  + +S+  L+H+FQ++ S EF  +D
Sbjct: 319 SYQRLVSFA-HLYSYTSVKCLVHWFQIMRSAEFRMYD 354


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 174 HAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGYXXXXXXXFGTCKRTGFSS 4
           H+  G+S  Q  + F L   G+  K    K    KI+ +         +CKR  +SS
Sbjct: 398 HSEFGTSQQQDAYEFLLYLLGKIRKSSIAKTDITKIFDFETEQKLSCLSCKRVRYSS 454


>SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -1

Query: 432 SGVGFQSTFGSLAVIPLSPVARFFLSCLRAIQISCSLTSGXXXXXXXXXXXIMLPVI 262
           +G+G    FG +AV+   P  R FL  L    ++ + T G             +P+I
Sbjct: 22  AGLGIGFLFGGVAVLRYGPGPRGFLRTLGQYMLTSAATFGFFMSIGSVIRNEDIPLI 78


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 341 MALKQLRKNRATGDNGITAKLPKVD*KPTPES 436
           MAL+Q + N    + G+T +LP +  K  P+S
Sbjct: 174 MALRQKKANVTHKELGVTMQLPIIGVKKNPQS 205


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = -1

Query: 402 SLAVIPLSPVARFFLSCLRAIQISCSLTSGXXXXXXXXXXXIMLPVIIPTPLYLAFPFIG 223
           ++A +PL  ++   L  L AI     +T              +LP ++   L L F FI 
Sbjct: 282 TIANVPLFLISGCILLFLIAIAFIVDVTLSEVYSGPLKSIVSLLPAVVFQVLTLPFTFI- 340

Query: 222 YDFLGQNYTNIPN 184
           Y  + +  T + N
Sbjct: 341 YSIVAERLTKLEN 353


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 382 ITSRPVFPEL--FESHSNFVQSDVRD 311
           +   P+FP    FE+ SNFV  D RD
Sbjct: 46  LAKNPLFPSYPRFENTSNFVSRDWRD 71


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 394 CYSVITSRPVFPELFESHSNFVQSDVRDNMKYKNYP 287
           C SVI + PVF  +    +     D R N+ Y+  P
Sbjct: 476 CKSVIDAPPVFKNVNHPTAPSTTIDERGNLNYEEIP 511


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 271 KHNFEKDNFYISYYPGRQTARNLNGSQTAQEKPGD 375
           +H FEK   Y+S   GRQ+ +     +   +K GD
Sbjct: 357 QHAFEKARDYLSIMNGRQSQKKKFVCEECLDKRGD 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,177
Number of Sequences: 5004
Number of extensions: 40098
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)