Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F01
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0329 - 23211636-23211857,23211946-23212079,23212170-232124...    31   0.49 
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646...    27   7.9  
01_03_0229 + 13995610-13995844,13996391-13996445,13998126-139982...    27   7.9  

>03_05_0329 -
           23211636-23211857,23211946-23212079,23212170-23212476,
           23212760-23213113
          Length = 338

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 478 HFCATRVAFERAFEGLRGRFSIDLRQ-FGCYSVITSRPVFP 359
           H   TR A E    GL   F +D    F CYS + S+P  P
Sbjct: 242 HGALTREALESKMSGLSPSFLLDKEDVFACYSAMLSQPTSP 282


>04_03_0156 -
           11963580-11963914,11964422-11964517,11964618-11964697,
           11965250-11965290,11965402-11965548,11965922-11966035,
           11968842-11968961,11969491-11969631,11969892-11970014,
           11970357-11970566
          Length = 468

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 174 HAPAGSSINQLLHYFQLVNSGEFHKFDY 91
           H P  ++   ++H  Q++  G   K+DY
Sbjct: 342 HEPQATATKNMIHLAQMIRGGTIAKYDY 369


>01_03_0229 +
           13995610-13995844,13996391-13996445,13998126-13998211,
           13999484-13999671,14000111-14000169,14000618-14000646,
           14000742-14001138,14001569-14002028
          Length = 502

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 234 PFIGYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVNS 115
           P   +DF+GQN+T+  ++   AP  +     + YFQ + S
Sbjct: 215 PVTFHDFMGQNFTS-EHLPVSAPGATPPGPYIAYFQPLQS 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,671
Number of Sequences: 37544
Number of extensions: 236351
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)