Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E24
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            29   0.74 
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   1.7  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   3.0  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   3.0  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   4.0  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.2  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.9  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   6.9  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.9  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   9.1  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 109 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 216
           +  V  D C+R  D+ +P  I  +YQ  +P + AD+
Sbjct: 77  MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 211 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 339
           DIV  F      ++  K  +   +T+LVD   SK +T+I  YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/110 (20%), Positives = 47/110 (42%)
 Frame = +1

Query: 16   IHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKV 195
            +  +   D A+D  +  +    ++ LA   L    +PDA      AD P    +V +L  
Sbjct: 1082 VEDIVSLDRAQDYAETVEQPEVWSRLAKAQLDGIRIPDAIESYLKADDPSNYSEVIELAS 1141

Query: 196  PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAG 345
               + + ++ +     ++    D+   L   L+   K+ Q+T+++ +L G
Sbjct: 1142 RAGKYEELIKYLLMARSKMHEPDVDSAL---LIAYAKTNQLTEMETFLIG 1188


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 606 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 454
           E +F++      I  ++F +++I    F+  C H V N LF+F    IT+SF
Sbjct: 17  EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = -2

Query: 299 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 132
           ++TN V + I++           S  TT S+    +   +S  +S M+    SAS     
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472

Query: 131 ASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 36
           +SGS++GSS   +SA+ + L+R   +   LA S
Sbjct: 473 SSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -2

Query: 578 NGRSRSDFSLKTILDKPSFILSV 510
           N R++++ SLK +  +PSF+L+V
Sbjct: 16  NTRTKAELSLKQLEKEPSFVLAV 38


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 158 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 33
           L  S +R  +   ++   PVR S A    R  +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 146 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 21
           V+R + SGS+ G S    SA    A S     SLA + P+ A
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERA 164


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 198 WHFELINVSDGVRLVRVGAAHASVRQ 121
           W  +LIN++DG+  +++   H+   Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 125 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 21
           GS   + PV+ S  YP+A  Q    S+  +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -2

Query: 596 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS-------NVSHPVLTKG 444
           +T P R NG S   F+L T    PS+ LS +      F Y+S       + SHP ++ G
Sbjct: 1   MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLG 59


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +1

Query: 385 DLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSL 564
           DLKL++ KL    K   ER   ++   +T    EKN+ +     + ++  +   L+ K  
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385

Query: 565 L----DLPFRAGAVK 597
           L    D  FRA  +K
Sbjct: 386 LISHYDDDFRAKELK 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,964
Number of Sequences: 5004
Number of extensions: 49017
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)