Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E24
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 33 0.19
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 30 1.8
08_02_1557 + 27867977-27869134 29 3.1
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940... 28 5.4
08_01_0303 + 2493388-2493954 28 7.1
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 28 7.1
01_06_0240 + 27794741-27795466 28 7.1
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 27 9.4
11_05_0096 - 19029632-19029937,19030376-19031197 27 9.4
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 27 9.4
04_04_0236 + 23825368-23825763,23826229-23828667 27 9.4
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890... 27 9.4
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 33.1 bits (72), Expect = 0.19
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 226 FETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL-AGHTSKYPYPILYDTDLKLKS 402
FET + E S D L+T+++DNL + + Y + TS Y YP L D + L
Sbjct: 540 FETKAALENSSSDDDSQLLTRIIDNLVDESHESNQTYSDSNDTSLYNYPSLSDWN-DLNE 598
Query: 403 SKLHFDDKERYE 438
++ F+D ER E
Sbjct: 599 VEI-FEDIERRE 609
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 29.9 bits (64), Expect = 1.8
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +1
Query: 391 KLKSSKLHFDDKERYERM-PFVKTGCDTFDKYEKNVIDFMD---TLKIKLGL----SNIV 546
+LKS KLH +D+E ++ PFVK + ++V+ L IKL L N
Sbjct: 1739 RLKSIKLHKNDEELLSKLDPFVKLLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNAN 1798
Query: 547 LSEKSLLDLPFRAGAVKHVLLT 612
L + L+D+ RAG L+T
Sbjct: 1799 LIKNVLMDIAQRAGNSNGHLVT 1820
>08_02_1557 + 27867977-27869134
Length = 385
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 101 VRASAAYPLARSQAWCKSLAASVP 30
V AS+AYP Q+ CKS AAS P
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSP 241
>01_07_0131 +
41292800-41293400,41293522-41293649,41293759-41294019,
41294154-41294416,41294507-41294831
Length = 525
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 410 YISTTKSATSVCLLSKLDVIHSTNMKRTLSTLW--IHSK*NLVCP 538
YIS+T T V L LD +H++ +K LW H NL+ P
Sbjct: 341 YISSTLFYTDVTYLEFLDRVHTSELKLRAQGLWEVPHPWLNLLIP 385
>08_01_0303 + 2493388-2493954
Length = 188
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 13 CIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRC 144
C HA+S AA +LH+ C R + L T L A VRC
Sbjct: 15 CHHAISRRSAAVELHR-CSRRRRPSPLTTTVALTRRRSPAAVRC 57
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 340 AGHTSKYPYPILYDTDLKLKSSKLHFDD-KERYERMPFVKTGCDTFDKYEKNVI 498
AG S P I+ D +++KLHFDD +RY + TF+K + ++
Sbjct: 300 AGRLSPKPDIIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKRPREMM 353
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 109 LPAVLPDACVRCTDADKPHAIGDV 180
+PA P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 567 QKRLFTQNNIGQT-KFYFECIHKVDNVLFIFVECITSSFDKRHTL 436
+++++ Q+ + T Y C+ +D + + V C+ + DKR T+
Sbjct: 631 RRKMYDQDMLSSTDSLYPYCMECLDRMAAVAVRCLKNKVDKRPTM 675
>11_05_0096 - 19029632-19029937,19030376-19031197
Length = 375
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 46 KDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 177
+ L D+ G+ A+A + A PD ++CT D PH + D
Sbjct: 206 RGLRSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 158 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWC 54
L+A+ T A+ G+ + YP+ S AWC
Sbjct: 165 LNATADYTAAAARRFGTGEISFDPTYPVIYSMAWC 199
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 334 YLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNV 495
Y+ T+ + +DT +KL+S + +DD +++ P V +G F++ NV
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANV 640
>02_03_0143 +
15685242-15686298,15688167-15688265,15688998-15689072,
15689309-15689364,15689786-15689875
Length = 458
Score = 27.5 bits (58), Expect = 9.4
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Frame = +1
Query: 175 DVYQLKV-PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHT 351
D Y+ + PN Q+D +S T + ++L + V+ ++K+ T+ +LA
Sbjct: 184 DDYRCSILPNHQSDFSLSSPDTLTLITRDENLAVAD----VEEWRAKEYTEK--WLAESE 237
Query: 352 SKYPYPILYDTDLKLKSSKLHFDDK-ERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKL 528
+KY +PI + T K++ F K ++R+P+ K ++K E + I ++ L+ ++
Sbjct: 238 TKYAFPINFPTGFKIEKG---FRGKLGNWQRLPYTK----AYEKNELHPIRNIERLEKRI 290
Query: 529 -GLSNIVLS 552
G+ + +LS
Sbjct: 291 VGILHELLS 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,811
Number of Sequences: 37544
Number of extensions: 311690
Number of successful extensions: 946
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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