Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E21
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 32 0.29
05_07_0276 + 28899378-28899953,28900010-28901242 29 2.7
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245 29 2.7
01_01_0888 + 6990354-6991862,6991970-6992431 29 3.5
06_03_1065 - 27316270-27317032,27317062-27317189 28 4.7
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 28 4.7
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 27 8.2
02_05_0883 - 32481502-32483085 27 8.2
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 27 8.2
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 33 KTFIYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNR 206
+TF ++ + LY + VR R R+S+ W S + P+ A+L+TV+ P +R
Sbjct: 427 RTFFFMALFLYMSLVVRINFFRGFRFSIAWWSYTFPM-TTASLATVKYAEAEPCFTSR 483
>05_07_0276 + 28899378-28899953,28900010-28901242
Length = 602
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 27 KIKTFIYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNR 206
+I F+ +F LY + VR + R R+SL W + + P+ AA++TV + + ++ R
Sbjct: 443 RIAYFVALF--LYMSLAVRVNMFRGFRFSLAWWAYTFPM-TSAAIATVLYASEVTNVATR 499
>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
Length = 686
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 27 KIKTFIYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNR 206
+I FI +F LY + VR R R+SL W + + P+ AA++T+ + ++ R
Sbjct: 531 RIAYFIALF--LYMSLAVRINFFRGFRFSLAWWAYTFPM-TGAAIATITYATEVTNVLTR 587
Query: 207 ---LGTMKKITFAVACLLALSSVYA 272
+G T VA LL + +A
Sbjct: 588 ALSIGLSGIATVTVAGLLVTTMFHA 612
>01_01_0888 + 6990354-6991862,6991970-6992431
Length = 656
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 27 KIKTFIYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVCVKAALSTVR 173
++ FI +F LY + VR L R R+SL W + + P+ AA++++R
Sbjct: 490 RVAYFIAMF--LYASLAVRINLFRGFRFSLAWWAYTFPM-TSAAIASIR 535
>06_03_1065 - 27316270-27317032,27317062-27317189
Length = 296
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 350 AIRRIQ*LQPRRWRTSGLRQPLPQAVIRISAICFIFQQLQN 472
A RR + + RRWR G+ Q LP A + + CF ++ Q+
Sbjct: 66 AARRRRRRRQRRWRHQGVAQLLPGAPVDHALPCFRGEERQS 106
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 87 VLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMKKITFAVAC 245
+L S SL K+ V ++ +S +V LI S +LG + T+AV C
Sbjct: 262 LLKSSGLKSLFVKASGVSVSIQVDVSNTKVDYLINSACEKLGVKAQDTYAVLC 314
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 27 KIKTFIYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNR 206
++ FI +F LY + VR R R+SL W + + P+ AA++++R + + R
Sbjct: 485 RVAYFIAMF--LYASLAVRINFFRGFRFSLAWWAYTFPM-TGAAIASIRYSTEVDNALTR 541
Query: 207 ---LGTMKKITFAVACLLALSSVYA 272
+ T V L A + ++A
Sbjct: 542 ALCVALSAVATLVVTALFATTMIHA 566
>02_05_0883 - 32481502-32483085
Length = 527
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 111 SLCWKSPSAPVCVKAALST-VRVINLIPSIHNRLGT 215
S C SPS+P+ + ALS RV+ L PS H L T
Sbjct: 109 SACADSPSSPLARRLALSVHARVLKLFPS-HLLLST 143
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = +3
Query: 27 KIKTFIYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNR 206
++ FI +F LY + VR R R+SL W + + P+ AA++++R + + +
Sbjct: 490 RVAYFIAMF--LYASLAVRINFFRGFRFSLAWWAYTFPM-TGAAIASIRYSTEVDNAFTK 546
Query: 207 LGTMKKITFAVACLLAL 257
+ A+ +LAL
Sbjct: 547 ALCVALSVLAMLTVLAL 563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,337
Number of Sequences: 37544
Number of extensions: 265333
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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