Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E21
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    34   0.063
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical ...    27   7.3  
U22831-9|AAN63388.1|  412|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U22831-8|AAK20070.2|  545|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -2

Query: 335 QRQSCRC---RHTFSCHSFVT--TVTCVNARQSQETSYCECDFLHCSKAI 201
           +RQ+C+C   + + SC+S +   T TC N +QS   S C C     SK++
Sbjct: 25  KRQNCKCSPPQSSCSCNSAIQSQTCTCHNTQQSTSASNCNCVLKSNSKSV 74


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 407 QPLPQAVIRISAICFIFQQLQNKSSWLYVKNVSRDS*SRMKALGDRRI 550
           QP    V+ +  +CFI     N S    ++ V  D   RMK  GD  I
Sbjct: 57  QPKVLIVVVVFVLCFIVGVCGNSSIITIIRGVVEDRRKRMKRHGDNAI 104


>AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical
           protein W06D4.3 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 447 QIADIRMTA*GRGWRRPEVRQRRGCSHCIRRIARYTCPETKLSL*THI 304
           +I D    A G+  ++    Q+R  SHCI+++  YT  E+ + L  H+
Sbjct: 120 KILDAYSIACGKIGQKERQLQKRTRSHCIKKMRMYTADES-VELNNHV 166


>U22831-9|AAN63388.1|  412|Caenorhabditis elegans Hypothetical
           protein F47D12.9b protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 542 CLPKPSFWINCPLKHF 495
           C PKPSF I  P++H+
Sbjct: 16  CNPKPSFTIKTPIEHY 31


>U22831-8|AAK20070.2|  545|Caenorhabditis elegans Hypothetical
           protein F47D12.9a protein.
          Length = 545

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 542 CLPKPSFWINCPLKHF 495
           C PKPSF I  P++H+
Sbjct: 149 CNPKPSFTIKTPIEHY 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,039
Number of Sequences: 27780
Number of extensions: 244027
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)