Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E20
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   2.0  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    25   6.1  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 274 PLYTFTLFYDNERFRRFINKSF*KS*K*IHLH*SVRDFNLKTSTSSY 414
           PLY   +F+D E +R  I+         I+LH  + DFN+    S++
Sbjct: 255 PLYDVVVFHDGEHWRVVIDSDQTGD---IYLHKPLADFNVAQEWSTF 298


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 23  HILSIKTVNNVKL-SDASLINPSKIYQKCKYKLNRT 127
           H   I+ +  +K+ SD   I  +++Y+K KY++N T
Sbjct: 121 HGYDIRALAQLKIASDVEEIEIAQLYRKNKYRINFT 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,080
Number of Sequences: 5004
Number of extensions: 30170
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)