Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E19
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine re...    29   2.1  
Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81575-4|CAB04630.1|  320|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine re...    27   6.5  
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    27   8.6  

>AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine
           receptor, class h protein250 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 510 IFAAICLQ*LQIQKK*SVQLYVLNVHFASTL 418
           IF A C+Q    +K  SV+  +LNVHF ST+
Sbjct: 33  IFGAYCIQFKTPEKMKSVKGLMLNVHFWSTI 63


>Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical
           protein T19C9.3 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 510 IFAAICLQ*LQIQKK*SVQLYVLNVHFASTL 418
           I+ A C+Q    +K  SV+  +LN+HF ST+
Sbjct: 29  IYGAYCIQSKTPEKMKSVKWLMLNIHFWSTV 59


>Z81575-4|CAB04630.1|  320|Caenorhabditis elegans Hypothetical
           protein R08H2.4 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 516 LSIFAAICLQ*LQIQKK*SVQLYVLNVHFASTL 418
           L I+ A C+Q     K  SV+  +LNVHF ST+
Sbjct: 28  LCIYGAYCIQFKTPVKMKSVKWVMLNVHFWSTV 60


>AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein243 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 516 LSIFAAICLQ*LQIQKK*SVQLYVLNVHFASTL 418
           LSI+ A C+      K   VQ  +LN+HF +TL
Sbjct: 35  LSIYGAYCILFQTPAKMKPVQFLILNLHFWNTL 67


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 300 LTCFLFSIWNYFSLTNNS 247
           L CF F +WN+    NNS
Sbjct: 189 LVCFRFFVWNFLKKRNNS 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,682,160
Number of Sequences: 27780
Number of extensions: 217862
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)