Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E19
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              24   1.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   3.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   3.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.1  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 300 LTCFLFSIWNYFSLTNNSRIL 238
           L C+++ +W  F L ++ R L
Sbjct: 69  LKCYMYCLWEQFGLVDDKREL 89


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 538 YVQRMIRVIHFRCHLFTIIANTKEMIRSALCT*CTFC 428
           YVQ+ +  I  R H   I    KE++   L   C  C
Sbjct: 32  YVQKQLHCILDRGHCDVIGKKIKELLPEVLNNHCNRC 68


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 465 ISFVFAIIVNKWQRKWI 515
           I+ V+ I +++W R W+
Sbjct: 122 ITSVYRIAIDEWDRLWV 138


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 23  VALGSRQLYNNSVGPSPVVCQNLNRTT 103
           VALGS   +NN+V    ++   +N  T
Sbjct: 299 VALGSYNKFNNNVYKDALIVCTVNSCT 325


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 23  VALGSRQLYNNSVGPSPVVCQNLNRTT 103
           VALGS   +NN+V    ++   +N  T
Sbjct: 352 VALGSYNKFNNNVYKDALIVCTVNSCT 378


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 449 MYLMYILLVLWSFVTTKCD 393
           M L+Y +   WSF T  CD
Sbjct: 97  MALLYEISGNWSFGTIMCD 115


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 461 PFSFMYLMYILLVLWSFVTTK 399
           PF++ Y    LL +  F+TT+
Sbjct: 222 PFTYRYGFSFLLYVSGFITTE 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,468
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)