Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E18
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   4.3  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   4.3  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   5.6  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    25   5.6  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   5.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   7.4  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    24   7.4  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    24   7.4  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    24   9.8  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 188 PPRAATAAEDHGILREKRKTGGTPEKNSIIKPN 286
           PP ++   ED+   + + K   TP  N+ IK N
Sbjct: 242 PPSSSKLKEDYKDSKREMKRSNTPWSNASIKKN 274


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 283 KLLNQARLKVLKVREDHVRNVLDEARKRLC 372
           K   + RLK++K+  DH+   L E  +  C
Sbjct: 754 KAAGRDRLKLIKLHYDHLSQALHEYEREKC 783


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
 Frame = +2

Query: 197 AATAAEDHG----ILREKRKTGGTPEKNSIIKPNC*TKLVSRCSKYVKITYVM 343
           A   AE HG     LRE     G    N  I P      V  C+ Y  ITY++
Sbjct: 601 ATILAEYHGSVLAYLRENNPDDGLNSANYGIDPVAMDNYVRSCAGYCVITYLL 653


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 179 NVELLLGLSIDFFSLFIGLLFDEG 108
           NVE L   S DF   FIG+ FD G
Sbjct: 51  NVECLSKRSEDFDIAFIGMPFDTG 74


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 268 FNHQTKLLNQARLKVLKVREDH 333
           FN    +LN  +  VLK R+DH
Sbjct: 107 FNEFLPILNDTKADVLKERDDH 128


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 276  MIEFFSGVPPVFLFSRSIP*SSAAVAARGG 187
            ++E+F GVPPV +  +S+   S +V    G
Sbjct: 1101 IVEYFGGVPPVNVSHKSL--ESVSVTEEAG 1128


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 212 QPLLLHEAAFFNVELLLGLSID 147
           QP+++H A F ++E  +G+ I+
Sbjct: 325 QPVMIHRAIFGSLERFMGILIE 346


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 273 IEFFSGVPPVFLF 235
           I+FF GVPP F F
Sbjct: 253 IKFFPGVPPFFTF 265


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 97  SI*WPSSNKRPMKRLKKSMLRPRRS 171
           S+ +   N+R +K++K+++L P RS
Sbjct: 83  SVDFQDRNQRSLKQVKRTVLLPHRS 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,155,013
Number of Sequences: 5004
Number of extensions: 15939
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)