Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E18
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    31   0.25 
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891...    29   1.0  
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270...    27   5.5  
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670...    27   7.2  
05_03_0479 + 14529783-14530613                                         26   9.6  
04_04_1310 - 32517074-32517193,32517295-32517360,32517468-325175...    26   9.6  
02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590     26   9.6  

>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 87  KQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 218
           KQI+ M+ FI Q                FNIEK +LV+ ++ KI
Sbjct: 8   KQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKI 51


>05_05_0231 +
           23488588-23488689,23488775-23488875,23489012-23489168,
           23489365-23489594,23489696-23489795,23489878-23489916
          Length = 242

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 87  KQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 218
           KQI+ M+ FI Q                FNIEK +LV+ ++ +I
Sbjct: 8   KQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRI 51


>02_03_0179 +
           16025962-16026143,16026570-16026684,16026852-16027065,
           16027346-16027397,16027411-16027696
          Length = 282

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 76  RCFKSRSSI*WPSSNKRPMKRLKKSMLRPRRSSTLKKAASCSNS 207
           R  +SRSS   P        R +++ +R R +S+L + A+C N+
Sbjct: 58  RVSRSRSSAAHPRGRLHAACRPRRAGIRVRSTSSLPQVATCKNN 101


>01_01_0858 -
           6699126-6699128,6699219-6699318,6700052-6700278,
           6701032-6701188,6701422-6701522,6702147-6702251
          Length = 230

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 87  KQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 218
           +Q+K M  FI Q                F IEK +LV+ ++ +I
Sbjct: 9   RQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRI 52


>05_03_0479 + 14529783-14530613
          Length = 276

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 106 WPSSNKRPMKRLKKSMLRPRRSSTLKKAASCSNS 207
           +PS +  P  + K+  L PRR +T  K  S S +
Sbjct: 148 FPSDSDTPSAKAKQMKLHPRRHTTPDKTPSSSTA 181


>04_04_1310 -
           32517074-32517193,32517295-32517360,32517468-32517558,
           32517741-32517870,32517944-32518032,32518300-32518376,
           32518539-32518607,32518800-32518874,32519040-32519135,
           32519232-32519396
          Length = 325

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 197 HEAAFFNVELLLGLSIDFFSLFIG 126
           HEAA F V  L+GL I  +SL IG
Sbjct: 184 HEAAHFLVAYLIGLPILGYSLDIG 207


>02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590
          Length = 331

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 345 HITYVIFTYFEHLETSLVQQFGLMIEFFSGVPPVFL 238
           H+  +    FEHL T+L    G M E F G   VFL
Sbjct: 161 HMQRLARKLFEHLSTALGLDGGAMWEAFGGDELVFL 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,742,353
Number of Sequences: 37544
Number of extensions: 114749
Number of successful extensions: 254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)