Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E18
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...    58   3e-09
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   6.4  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   6.4  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 31/68 (45%), Positives = 35/68 (51%)
 Frame = +3

Query: 84  QKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXX 263
           QKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM              
Sbjct: 9   QKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEKQVELQR 68

Query: 264 XIQSSNQI 287
            IQ+SN +
Sbjct: 69  KIQASNSL 76



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +1

Query: 289 LNQARLKVLKVREDHVRNVLDEARKRL 369
           LN  RL+ LK REDH+  VLDEAR  L
Sbjct: 76  LNAGRLRCLKAREDHIGAVLDEARSNL 102


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 324  TYFEHLETSLVQQFGLMIEFFSGVPPV 244
            +YF+H +TS + +FGL I   +GV  V
Sbjct: 1762 SYFDHPKTSTLYEFGLEISEPNGVDSV 1788


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 324  TYFEHLETSLVQQFGLMIEFFSGVPPV 244
            +YF+H +TS + +FGL I   +GV  V
Sbjct: 1762 SYFDHPKTSTLYEFGLEISEPNGVDSV 1788


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 324  TYFEHLETSLVQQFGLMIEFFSGVPPV 244
            +YF+H +TS + +FGL I   +GV  V
Sbjct: 1762 SYFDHPKTSTLYEFGLEISEPNGVDSV 1788


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 324  TYFEHLETSLVQQFGLMIEFFSGVPPV 244
            +YF+H +TS + +FGL I   +GV  V
Sbjct: 1762 SYFDHPKTSTLYEFGLEISEPNGVDSV 1788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,446,897
Number of Sequences: 27780
Number of extensions: 92982
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)