Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E17
         (66 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   7.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    18   9.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +3

Query: 36  LYWWPC 53
           LYW PC
Sbjct: 337 LYWLPC 342


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 15  GTRVDSRLYWWP 50
           G RVD+  + WP
Sbjct: 203 GFRVDAAKHMWP 214


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 59  SSTGPPIQARVNPRAEFL 6
           + T   +QA++NP   F+
Sbjct: 946 TKTSGTVQAQINPDFAFI 963


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,425
Number of Sequences: 438
Number of extensions: 59
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 3
effective length of database: 145,029
effective search space used:  2610522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)