Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E16
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    67   2e-12
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    28   1.3  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   3.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   5.4  

>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 28/39 (71%), Positives = 36/39 (92%)
 Frame = +2

Query: 533 TRQTYFLPVIGLVDPDKLKPGDLVGVNKDSYLILETLPA 649
           TRQT FLP+IGLV+P++L PGDL+GVNKDSYLI++ LP+
Sbjct: 127 TRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPS 165



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = +3

Query: 339 KYKENTEKIKVNKTLPYLVSNVIELLDVDPQE 434
           K KEN EKI  NK LPYLV NV+E+LD+ P E
Sbjct: 70  KIKENQEKISNNKMLPYLVGNVVEILDMQPDE 101



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/34 (50%), Positives = 26/34 (76%)
 Frame = +1

Query: 136 DGEEALSEEVLRMPTDEIISRTRLLDNEIKIMKS 237
           +G + + +E+L    DE+ SRTRLL+N+IK+MKS
Sbjct: 22  EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKS 55


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 127 IWEDGEEALSEEVLRMPTDEIISRTRLLDN 216
           ++ DGE+ L  E+ ++PT+ I S T   DN
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/71 (23%), Positives = 27/71 (38%)
 Frame = +3

Query: 198 YKTPGQRN*NNEKRKSMSEXSPXRKRCPTGRKXXQFRXAPFQENGAXKYKENTEKIKVNK 377
           Y +   R+  +     +SE    R      R+   F   P QE G   Y E     +++ 
Sbjct: 260 YSSRASRSRQSSLSSRLSELPSKRASLEILRRENTFPADPIQEFGEKAYNERELMEEISN 319

Query: 378 TLPYLVSNVIE 410
             P L  N++E
Sbjct: 320 FEPLLDDNLLE 330


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 299 PIPXGPFPGERSGKIQRK 352
           P P GPFPG  S  IQ K
Sbjct: 131 PTPPGPFPGGLSTDIQEK 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,672
Number of Sequences: 5004
Number of extensions: 44979
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)