Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E16
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0511 + 3688788-3688880,3689050-3689166,3689959-3690066,369... 79 3e-15
02_05_1126 - 34284733-34284810,34285151-34285291,34285424-342855... 78 7e-15
04_03_0179 - 12304726-12304782,12305509-12305601,12305729-123058... 39 0.004
09_02_0289 - 6941154-6941399,6941630-6941722,6941801-6941884,694... 29 2.4
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 29 4.2
07_01_1096 - 10063016-10063117,10063530-10063580,10063924-100640... 27 9.8
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 27 9.8
>06_01_0511 +
3688788-3688880,3689050-3689166,3689959-3690066,
3690634-3690825,3691010-3691201,3691484-3691602,
3691740-3691827,3692155-3692274,3692378-3692518,
3693065-3693142
Length = 415
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = +2
Query: 533 TRQTYFLPVIGLVDPDKLKPGDLVGVNKDSYLILETLPA 649
TRQT FLPV+GLVDPDKLKPGDLVGVNKDSYLIL+TLP+
Sbjct: 104 TRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPS 142
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Frame = +3
Query: 324 ENGAXKYKENTEKIKVNKTLPYLVSNVIELLDVDPQEE-EEDGA 452
E+ K KEN EKIK+NK LPYLV N++E+L+++P++E EEDGA
Sbjct: 42 ESFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGA 85
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 142 EEALSEEVLRMPTDEIISRTRLLDNEIK 225
++A +++ M T++I+ +RLLDNEI+
Sbjct: 4 DDAEDDQLASMSTEDIVRASRLLDNEIR 31
>02_05_1126 -
34284733-34284810,34285151-34285291,34285424-34285543,
34285787-34285874,34285962-34286080,34286437-34286628,
34286802-34286993,34287309-34287416,34287983-34288099,
34288214-34288315
Length = 418
Score = 77.8 bits (183), Expect = 7e-15
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = +2
Query: 533 TRQTYFLPVIGLVDPDKLKPGDLVGVNKDSYLILETLPA 649
TRQT FLPVIGLVDP+KLKPGDLVGVNKDSYLIL+TLP+
Sbjct: 107 TRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPS 145
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/44 (59%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Frame = +3
Query: 324 ENGAXKYKENTEKIKVNKTLPYLVSNVIELLDVDPQEE-EEDGA 452
E+ K KEN EKIK+NK LPYLV N++E+L+++P++E EEDGA
Sbjct: 45 ESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGA 88
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +1
Query: 142 EEALSEEVLRMPTDEIISRTRLLDNEIKIMK 234
++A +++ M T++I+ TRLLDNE +++K
Sbjct: 4 DDADDDQLASMSTEDIVRATRLLDNETRVLK 34
>04_03_0179 -
12304726-12304782,12305509-12305601,12305729-12305833,
12306715-12306793,12307297-12307415,12307728-12307919,
12308158-12308277,12309542-12309613,12310157-12310246,
12310402-12310485
Length = 336
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 536 RQTYFLPVIGLVDPDKLKPGDLVGVNKDS 622
R+ F P+ G+V P KLKPGDL+GV+ S
Sbjct: 81 RKIIFRPIAGVVYPSKLKPGDLIGVDSTS 109
>09_02_0289 -
6941154-6941399,6941630-6941722,6941801-6941884,
6947011-6947146,6947310-6947455,6947826-6948051,
6948595-6948677,6949004-6949198,6949276-6949374,
6949762-6949875,6949949-6950036,6950353-6950558,
6950850-6950902,6951074-6951377,6952195-6952283,
6952675-6953052,6953665-6953726,6954124-6954189,
6955126-6955205
Length = 915
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 231 HYFNFVVQESCTADDFISRHTKDFLAKRFFSILPN 127
H F V CTAD +++ H D+L K I PN
Sbjct: 637 HVFPNKVLVDCTADTYVACHYYDWLKKGIHVITPN 671
>10_08_0765 -
20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 124 SIWEDGEEALSEEVLRMPTDEIISRTRLLDNEIKIMKSAS 243
S+W+ + LSE VL D+I+++ L D KI ++ S
Sbjct: 61 SLWQWRSQGLSEVVLSWSVDQILNKDLLRDKVAKIPETFS 100
>07_01_1096 -
10063016-10063117,10063530-10063580,10063924-10064033,
10064367-10064454,10064543-10064603,10065198-10065295,
10065394-10065512,10066593-10066702,10066801-10066859
Length = 265
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 339 KYKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEED 446
+Y+ K+++ + P+ V ++ E DVDP+E+EE+
Sbjct: 116 QYRIRMRKLRLKVSYPFKVLDM-EKGDVDPEEDEEE 150
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +3
Query: 342 YKENTEKIKVNKTLPYLVSN--VIELLDVDPQEEEEDGAVVGPLXLRARXX*XVTTFAPV 515
++ + +N+ L ++ VIEL D P EE+ GA+ G A V P+
Sbjct: 174 HRRDAAMANLNRDLVFVSEEGPVIELFDEKPLEEDPIGAMAGLAAQCAEIVGNVLQLVPL 233
Query: 516 KFKTLEHVK--LTSYQLLG 566
+ L +V+ SY+ G
Sbjct: 234 ESADLSNVRKSAVSYESRG 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,900,228
Number of Sequences: 37544
Number of extensions: 287843
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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