Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E16
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome re...    78   5e-15
AF003740-8|AAC48136.1|  320|Caenorhabditis elegans Hypothetical ...    30   1.2  
U88167-7|AAB42229.1|  378|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    27   8.7  

>AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 5 protein.
          Length = 430

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 35/39 (89%), Positives = 37/39 (94%)
 Frame = +2

Query: 533 TRQTYFLPVIGLVDPDKLKPGDLVGVNKDSYLILETLPA 649
           TR TYFLPV+GLVDPD+LKPGDLVGVNKDSYLILE LPA
Sbjct: 119 TRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPA 157



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 32/39 (82%)
 Frame = +3

Query: 339 KYKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAV 455
           + KENTE+IKVNKTLPYLVSNV+ELLD++   EEE   V
Sbjct: 65  RIKENTERIKVNKTLPYLVSNVVELLDLEDNTEEEGANV 103



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/32 (59%), Positives = 28/32 (87%)
 Frame = +1

Query: 142 EEALSEEVLRMPTDEIISRTRLLDNEIKIMKS 237
           E+A+ EE+L+M T+++ SRT LLDNEI+IM+S
Sbjct: 19  EDAIDEEILKMSTEDLKSRTHLLDNEIRIMRS 50


>AF003740-8|AAC48136.1|  320|Caenorhabditis elegans Hypothetical
           protein C41D11.1 protein.
          Length = 320

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 52  RFXFLFKN*IENTQITMATTLEDKSIWEDGEEALSEEVLRMPTDEIISRTRLLDNEIK 225
           R   LFK   E   I M   +E   IW+D    + +E   +PTD       LL N+ +
Sbjct: 229 RHVALFKKQRETMPIKMIKVIEVDGIWKDDVNFVPQEGTLLPTDHDEKTVVLLGNDYR 286


>U88167-7|AAB42229.1|  378|Caenorhabditis elegans Hypothetical
           protein D2092.2 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 554 VRSKFDVFEGFEFNWRKCCHXLXGP 480
           V SK   F+GF F W++ C  L  P
Sbjct: 164 VLSKAKSFDGFPFTWQRLCELLIEP 188


>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 258 KXHSWTCAFHYFNFVVQESCTADDFISRHTKDFLAKRFFSILPNGLIF 115
           K   W C + YF+ V++    +  F+SR    FL     ++    +IF
Sbjct: 114 KVELW-CGYPYFHLVIRRLAISSQFLSRRFSAFLGLYIAAVRAFSVIF 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,015
Number of Sequences: 27780
Number of extensions: 258964
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)