Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E15
         (159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   0.77 
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   1.3  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    23   7.2  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      23   7.2  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    23   7.2  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    23   7.2  

>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
          Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 89 PPDIVAFVRVTTKRV*CHLVPNSCS 15
          P D+  + ++ T+   CH VP  CS
Sbjct: 15 PADVENYQKICTQIFSCHFVPRRCS 39


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 85  GGLDLLALSEEDVTKMLAATTHLGA 159
           G  ++L  ++ED+ ++LAA  H+G+
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGS 29


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 154 PNGWSPQ 134
           PNGWSPQ
Sbjct: 605 PNGWSPQ 611


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 73  ATMSGGLDLLALSEEDVT 126
           +T+SG +D++ + +ED T
Sbjct: 21  STLSGAIDVIVVEQEDKT 38


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +1

Query: 97  LLALSEEDVTKMLAATTHLGA 159
           +L  +++D+  +LAA +H+G+
Sbjct: 10  VLNATDDDIKNLLAADSHIGS 30


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 10  PGLQEFGTRWHYTRLVVTLTN 72
           P ++  G RW YTR  + + N
Sbjct: 171 PSIEIRGNRWFYTREDIKMKN 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,358
Number of Sequences: 5004
Number of extensions: 7930
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)