Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E15
         (159 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    27   1.6  
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    25   6.3  
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909...    25   8.3  
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546...    25   8.3  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 73  ATMSGGLDLLALSEEDVTKMLAATTHLG 156
           A   G    L+ +E+DV  MLAA  HLG
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLG 30


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 85  GGLDLLALS--EEDVTKMLAATTHLG 156
           GG    ALS  E+D+  MLAA  HLG
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLG 30


>11_04_0258 +
           15489733-15490054,15490150-15490339,15490438-15490910,
           15501203-15501513
          Length = 431

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 14  GCRNSARGGIIRV*S*LLQTQRCRED*TCLRSARKM 121
           GC NS R  ++R  S L+ +  C ED + + +   M
Sbjct: 362 GCANSCRDQVLREVSRLVASLSCGEDVSVMLAGHSM 397


>03_06_0206 -
           32353308-32353566,32353784-32354024,32354408-32354627,
           32354981-32355316,32355632-32355688,32355787-32355810
          Length = 378

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 6   DPRAAGIRHEVALYAFSRNSYKRNDVGRIRLACAQR 113
           +P+  G  H V LY+ +   Y  +  GR    C +R
Sbjct: 142 NPKKPGAPHNVRLYSIASTRYGDSFDGRTTSLCVRR 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,897,653
Number of Sequences: 37544
Number of extensions: 67722
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 33
effective length of database: 13,554,396
effective search space used: 257533524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)