Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E15
         (159 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   1.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   5.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    18   9.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 90 SSRHRCVCKSYD*TRIMP 37
          +S H C  K+ D T+IMP
Sbjct: 20 NSPHTCRTKNGDYTKIMP 37


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 43  YTRLVVTLTNATMSGGLDLLALS 111
           YT+L V   + T+  G+  +ALS
Sbjct: 240 YTKLTVAGESFTVKNGIYGIALS 262


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 84  RHRCVCKSYD*TRIMPPRAEFLQP 13
           R RC+       R +PP A   +P
Sbjct: 147 RFRCIGPPTPFPRFIPPNAYRFRP 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,586
Number of Sequences: 438
Number of extensions: 532
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used:  2646540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)