Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E13
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 169 3e-43
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 169 3e-43
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 169 3e-43
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 1e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 0.45
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 29 0.59
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.0
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 5.5
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 5.5
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 26 5.5
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 25 7.3
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 169 bits (411), Expect = 3e-43
Identities = 73/99 (73%), Positives = 87/99 (87%)
Frame = +2
Query: 359 IVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAG 538
I+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 111 IISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAG 170
Query: 539 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHP 655
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HP
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHP 209
Score = 151 bits (366), Expect = 9e-38
Identities = 66/95 (69%), Positives = 80/95 (84%)
Frame = +3
Query: 78 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 257
+HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+
Sbjct: 17 AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFV 76
Query: 258 APEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGQL 362
A EG+YTGQFVYCGK A L VGNV+PVG MPEG +
Sbjct: 77 ATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTI 111
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 29 MGRVIRAQRKGAG 67
MGRVIRAQRK G
Sbjct: 1 MGRVIRAQRKSGG 13
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 169 bits (411), Expect = 3e-43
Identities = 73/99 (73%), Positives = 87/99 (87%)
Frame = +2
Query: 359 IVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAG 538
I+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 111 IISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAG 170
Query: 539 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHP 655
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HP
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHP 209
Score = 151 bits (366), Expect = 9e-38
Identities = 66/95 (69%), Positives = 80/95 (84%)
Frame = +3
Query: 78 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 257
+HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+
Sbjct: 17 AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFV 76
Query: 258 APEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGQL 362
A EG+YTGQFVYCGK A L VGNV+PVG MPEG +
Sbjct: 77 ATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTI 111
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 29 MGRVIRAQRKGAG 67
MGRVIRAQRK G
Sbjct: 1 MGRVIRAQRKSGG 13
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 169 bits (411), Expect = 3e-43
Identities = 73/99 (73%), Positives = 87/99 (87%)
Frame = +2
Query: 359 IVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAG 538
I+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 111 IISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAG 170
Query: 539 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHP 655
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HP
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHP 209
Score = 151 bits (366), Expect = 9e-38
Identities = 66/95 (69%), Positives = 80/95 (84%)
Frame = +3
Query: 78 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 257
+HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+
Sbjct: 17 AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFV 76
Query: 258 APEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGQL 362
A EG+YTGQFVYCGK A L VGNV+PVG MPEG +
Sbjct: 77 ATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTI 111
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 29 MGRVIRAQRKGAG 67
MGRVIRAQRK G
Sbjct: 1 MGRVIRAQRKSGG 13
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/88 (31%), Positives = 49/88 (55%)
Frame = +2
Query: 392 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 571
+ +L R++G+ A +I D K V+L SG ++ + ++ +G+V+ + + KA
Sbjct: 189 KAKLCRSAGSSARIIAF--DGKYAIVRLQSGEERKILDTSFATIGVVSNIYWQHRQLGKA 246
Query: 572 GRAYHKYKVKRNCWPYVRGVAMNPVEHP 655
GR+ ++ R P VRG AMNP +HP
Sbjct: 247 GRS--RWLGIR---PTVRGTAMNPCDHP 269
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 0.45
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -1
Query: 537 PATIPTMPLLLDGNTFLAPDGSFTRVRLASGL*PITVAKLPEARASRPRSPIFSSKL 367
PAT+P N F P F +L SGL V+ P+ +P S+L
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 449 PDCDL*LWQNCQRREPVVLDHPSFLPNYTQLPF 351
PD + LW + RE + D+P FL Y P+
Sbjct: 86 PDYEYVLWTDESMREFIATDYPWFLTQYDSYPY 118
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 548 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 640
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 293 LWQESNSRSWQCNACGCYA 349
LW++ CNACG YA
Sbjct: 429 LWRKDRHGQTVCNACGLYA 447
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 293 LWQESNSRSWQCNACGCY 346
LW+ S CNACG Y
Sbjct: 22 LWRRGPDNSLLCNACGLY 39
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 293 LWQESNSRSWQCNACGCY 346
LW+ S + CNACG Y
Sbjct: 182 LWRRDESGNPICNACGLY 199
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -2
Query: 515 LCCLMVTLFWHQMEALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLP 372
LCCL+ L ++ A + W P + Q + PVV F P
Sbjct: 246 LCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGFAP 293
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 449 PDCDL*LWQNCQRREPVVLDHPSFLPNYTQLPF 351
PD + LW + R + ++P FLP + PF
Sbjct: 111 PDYEYILWTDEMSRNFIADNYPWFLPYFDAYPF 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,428
Number of Sequences: 5004
Number of extensions: 67706
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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