Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E13
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 165 4e-41
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 2.5
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 29 2.5
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 2.5
03_06_0069 - 31449319-31450368 29 2.5
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196... 29 3.3
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 7.5
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 27 9.9
03_05_0718 - 27100882-27100929,27101197-27101303,27101446-271015... 27 9.9
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 165 bits (400), Expect = 4e-41
Identities = 72/100 (72%), Positives = 85/100 (85%)
Frame = +2
Query: 356 AIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVA 535
A+VCN+E +GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G VA
Sbjct: 111 AVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVA 170
Query: 536 GGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHP 655
GGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHP
Sbjct: 171 GGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHP 210
Score = 147 bits (357), Expect = 6e-36
Identities = 62/93 (66%), Positives = 79/93 (84%)
Frame = +3
Query: 78 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 257
SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P+++K +KELF+
Sbjct: 18 SHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFV 77
Query: 258 APEGLYTGQFVYCGKKATLEVGNVMPVGAMPEG 356
A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG
Sbjct: 78 AAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEG 110
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 29 MGRVIRAQRKGAGS 70
MGRVIRAQRKGAGS
Sbjct: 1 MGRVIRAQRKGAGS 14
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 448 GRQTYASKASIWCQKSVTIKQQRHGWYCRGWWSY*QAH 561
G++ S CQKS + K++ GW+C W Q H
Sbjct: 895 GQENPDSLTDYGCQKSGSTKKKVAGWWCGKVWMSNQVH 932
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 476 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 357
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 431 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 470
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 476 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 357
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 441 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 480
>03_06_0069 - 31449319-31450368
Length = 349
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 423 KLPEARASRPRSPIFSSKLHTIALQA*HPQALHCQLLELLSC 298
KLP + +S P + +S +LH + A PQA + L C
Sbjct: 246 KLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYDVATASLPC 287
>02_05_1114 +
34218218-34218463,34219143-34219179,34219450-34219633,
34219725-34219873,34220271-34220504,34220592-34220781,
34220863-34220988,34221386-34221485,34221598-34221957
Length = 541
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -3
Query: 559 GLVNTTTTRDNTNHASVA*W*HFFGTRWKLYSRTFG--VRIVTY-NCGKIARG 410
GL+NTTT N ++ S W GT K+ S TF +I Y +C + +RG
Sbjct: 374 GLLNTTTFEPNPDYYSALLWNRLMGT--KVLSATFNGTNKIRAYAHCARDSRG 424
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 443 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 562
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 614 ASSCVSLCICDKHAQPSRWACQYDHHPR 531
A C+ L + +K+ +P +W C H P+
Sbjct: 665 ALMCIGLAVREKNDEPFQWMCWLRHLPQ 692
>03_05_0718 -
27100882-27100929,27101197-27101303,27101446-27101593,
27102195-27102328,27102608-27102929
Length = 252
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 435 ITVAKLPEARASRPRSPIFSSKLHTIAL-QA*HPQALHCQLLELLSCHSKQIDQY 274
IT A P A AS P I K H + L A P A C +L L+ KQID+Y
Sbjct: 194 ITGASHPPA-ASLPLLFIDGPKFHHLQLWYALFPGAAGCIILCLIEEEKKQIDRY 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,595,796
Number of Sequences: 37544
Number of extensions: 492803
Number of successful extensions: 1317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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