Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E13
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 174 4e-44
Z70287-1|CAA94302.3| 294|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 5.1
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 28 6.7
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 28 6.7
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 27 8.9
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 174 bits (424), Expect = 4e-44
Identities = 98/212 (46%), Positives = 123/212 (58%), Gaps = 3/212 (1%)
Frame = +2
Query: 29 MGRVIRAQRKGAGSCLFTYQKKERCT*TSFLRLCRTSWIH---QGSRKGYNS*PWSRGTL 199
MGR IR QRKGAG ++ K + S LR + H +G K P L
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGA--SKLRPLDYAERHGYIKGLVKDIIHDPGRGAPL 58
Query: 200 SCCPFP*SVQVQDAQRTVHCSRRSLYWSICLLWQESNSRSWQCNACGCYA*RAIVCNLEE 379
+ F + + + TV + ++ + G +CN+E
Sbjct: 59 AIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVEN 118
Query: 380 KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKP 559
K GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP
Sbjct: 119 KSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKP 178
Query: 560 ILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHP 655
+LKAGR+YHKYK KRN WP VRGVAMNPVEHP
Sbjct: 179 LLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHP 210
Score = 156 bits (379), Expect = 1e-38
Identities = 67/102 (65%), Positives = 84/102 (82%), Gaps = 1/102 (0%)
Frame = +3
Query: 78 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 257
SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPYK+KT K +
Sbjct: 18 SHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVV 77
Query: 258 APEGLYTGQFVYCGKKATLEVGNVMPVGAMPEG-QLCVIWKK 380
A EG++TGQF++CG KA +++GN++PVG +PEG +C + K
Sbjct: 78 AAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENK 119
>Z70287-1|CAA94302.3| 294|Caenorhabditis elegans Hypothetical
protein R09E10.1 protein.
Length = 294
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 414 EARASRPRSPIFSSKLHTIALQA*HPQALHCQLLELLSCHSKQIDQYKDLLEQ 256
E R+SR + I KL +L P+ QL L+ ++ +++YK LEQ
Sbjct: 78 EERSSRSKKSIREGKLKNFSLPKDEPEITALQLDAELTKSARLMEEYKIALEQ 130
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 138 HGYIKGVVKDIIHDPGRGAPLAVVHFR 218
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 138 HGYIKGVVKDIIHDPGRGAPLAVVHFR 218
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 434 IGHNPDAKRTRVKLPSGAKKVL 499
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 293 LWQESNSRSWQCNACGCY 346
LW+ S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 293 LWQESNSRSWQCNACGCY 346
LW+ S ++ CNACG Y
Sbjct: 299 LWRRDGSGNYLCNACGLY 316
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 293 LWQESNSRSWQCNACGCY 346
LW+ S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 78 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 200
S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 2 SEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,012,002
Number of Sequences: 27780
Number of extensions: 406314
Number of successful extensions: 921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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