Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E12
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    37   0.001
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    33   0.019
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   3.0  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    26   3.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   6.8  

>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +1

Query: 259 SECPIQQNDRDINPYXXXXXXXXXXXXDQPFP--LPTQRQVSTIPRAMPD---GSTDYRV 423
           S+CP+    RD                D P P  LPT+R++STIP+ + +   G  +  +
Sbjct: 12  SKCPVPPEVRDAW-LKSHGGKKPSEVHDTPHPTMLPTEREISTIPKVVTESDSGKEEKWI 70

Query: 424 YPSQQM 441
           YPSQQM
Sbjct: 71  YPSQQM 76


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 187 SNPPPECPMHKKTDEN 234
           +NPPP CPMHK ++EN
Sbjct: 82  ANPPPGCPMHKASNEN 97


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 165 FIIGLCCYFIAHVCDLRKTKF 103
           +++ LCCY+I   C+ +K  F
Sbjct: 316 YVLLLCCYYIFDTCNGQKNHF 336


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 139 KVTAEAYDKTTT-GLKNSNPPPECPMHKKTDENEAPKKKTYSECPIQQNDRDINP 300
           K +A  ++K +  G KN   PP+    +KT+EN   KK T S  P ++  +  NP
Sbjct: 143 KGSAGNHEKNSVNGQKNPEMPPK---RRKTEEN---KKPTKSALPKKEASKKKNP 191


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 311 CHQLTNSLLQTNRFLCQLSVKCQQYQ 388
           C QL N  + T   LC + + C ++Q
Sbjct: 520 CEQLQNGFIPTCERLCTILLSCGRHQ 545


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 360  WQRKRLVWSRLLVSWWHHIIRIYVSIILL 274
            WQ K L +S  L   W    ++Y   ILL
Sbjct: 991  WQEKELAFSSTLSEAWRTRRKMYAEAILL 1019


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,769
Number of Sequences: 5004
Number of extensions: 29867
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)