Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E12
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    31   0.54 
03_05_0324 - 23121401-23121465,23121507-23122059                       29   2.2  
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    27   5.1  
02_02_0233 + 8105765-8107840                                           27   5.1  
10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994...    27   6.7  
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    27   6.7  
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120...    27   8.8  

>02_01_0075 -
           522554-522616,522742-522748,523033-523136,523237-523368,
           525209-525401,525978-526330,526693-526791,526864-526935,
           527062-527213,527338-527386,527755-527885,528067-528307,
           528392-528565,528656-528797,529236-529282,529370-529450,
           530170-530271,530345-530440,531437-531444,531575-531616,
           531830-531894,534761-534853,534888-534959,535303-535509,
           536318-537226,537503-538158
          Length = 1429

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 441 HLLTRVNPIVSRTIRHCSWYC*HLTLSWQRKRLVWSRLLVSWWHHIIRIYVSIILLNGTL 262
           H+L+ V P+   + + C W C      +Q      +   +SWW  +  + +S++L + T 
Sbjct: 601 HMLSHV-PL---SCKKCFWVCLSCCAVYQLCDFACAVAFISWWGWVGEVRISLLLFDRTT 656

Query: 261 RV 256
           RV
Sbjct: 657 RV 658


>03_05_0324 - 23121401-23121465,23121507-23122059
          Length = 205

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 115 T*VTNMGNKVTAEAYDKTTTGL---KNSNPPPECPMHKKTDENEAPKKKTYSECPIQQND 285
           T V +M     AEA + T+T     K+ N    CP  KK +      + T + CPI +  
Sbjct: 99  TPVDSMSKDPPAEAENGTSTTSGPEKDPNAAKSCPPDKKHEPTRITSEATRTWCPIHKTR 158

Query: 286 R 288
           R
Sbjct: 159 R 159


>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +1

Query: 127 NMGNKVTAEAYDKTTTGLKNSNPPP-ECPMHKKTDENEAP 243
           N GN++ AE  D     LK   PPP   P+   T   E P
Sbjct: 700 NNGNRLVAEFVDPQEVKLKLEPPPPAAAPISPATTPKEPP 739


>02_02_0233 + 8105765-8107840
          Length = 691

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 14 QCFIFLSALLYYYKLNALVKIC 79
          QCF+F+SA    Y++ AL + C
Sbjct: 28 QCFLFVSATFRRYRIPALFRTC 49


>10_08_0460 - 18098187-18098248,18098331-18098399,18098468-18099434,
            18100089-18100808,18100942-18101031,18101076-18101138,
            18101223-18101366,18101471-18101527,18101606-18101680,
            18101757-18101836,18101937-18102050,18102166-18102258,
            18102470-18102553,18102812-18102859,18105207-18105337,
            18105903-18106135
          Length = 1009

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 121  VTNMGNKVTAEAYDKTTTGLKNSNPPPECPMHK 219
            +TN+GNK       KTT   K +N   E P  K
Sbjct: 971  ITNIGNKQEEMKTSKTTKRRKKNNTQEETPKEK 1003


>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 95  EVIYHHIFSPEHLIYNNI 42
           E+IY ++  PEH  +NNI
Sbjct: 432 ELIYRNLLQPEHTYFNNI 449


>07_03_1606 +
           28111158-28111328,28111431-28111549,28111984-28112024,
           28112654-28112713,28112812-28112858,28112939-28113133,
           28113236-28113282,28113363-28113429,28113521-28113621,
           28113725-28113826,28113904-28114042,28114120-28114182,
           28114323-28114406,28114981-28115295
          Length = 516

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 375 HLTLSWQRKRLVWSRLLVSWWHHIIRIYVSIIL 277
           +LT     +++ W + +V WW  ++R  VSI L
Sbjct: 348 NLTKKAPNEKITWRQQVVIWWAGLMRGAVSIAL 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,474
Number of Sequences: 37544
Number of extensions: 196213
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)