Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E12
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-4|CAA88969.1|  280|Caenorhabditis elegans Hypothetical pr...    41   3e-04
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    27   8.0  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    27   8.0  
AL132862-9|CAB70229.1|  129|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL132862-7|CAB70228.1|  129|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z49130-4|CAA88969.1|  280|Caenorhabditis elegans Hypothetical
           protein T06D8.6 protein.
          Length = 280

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 265 CPIQQNDRDINPYXXXXXXXXXXXX-DQPFPLPTQRQVSTIPRAMPDGSTDYRVYPSQQM 441
           CP+  +   INP              DQPF LPT+R+ STIP+A  +  T+   YPS QM
Sbjct: 57  CPVGADKASINPLNNELEHPNQKPAPDQPFALPTKREKSTIPKAGTE--TETWTYPSPQM 114


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 420 PIVSRTIRHCSWYC*HLTLSWQRKRLVWSRLL 325
           P V+  ++  ++YC H T+ W  +  V SRLL
Sbjct: 335 PNVAEKMKKATYYCVHYTIDWVNRNCV-SRLL 365


>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 133 GNKVTAEAYDKTTTGLKNSNPPPECPMHKKTDEN 234
           GN+V A+ YD+TT G        E  +  KT  N
Sbjct: 24  GNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRN 57


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 101 STEVIYHHIFSPEHLIYNNIK 39
           ST + +HH++ P+  +YN++K
Sbjct: 126 STIIPFHHLWIPDTYLYNSVK 146


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 101 STEVIYHHIFSPEHLIYNNIK 39
           ST + +HH++ P+  +YN++K
Sbjct: 126 STIIPFHHLWIPDTYLYNSVK 146


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 101 STEVIYHHIFSPEHLIYNNIK 39
           ST + +HH++ P+  +YN++K
Sbjct: 126 STIIPFHHLWIPDTYLYNSVK 146


>AL132862-9|CAB70229.1|  129|Caenorhabditis elegans Hypothetical
           protein Y73F8A.14 protein.
          Length = 129

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 178 LKNSNPPPECPMHKKTDENEAPKKKTYS 261
           L N NP P  P +   DEN++  K T S
Sbjct: 69  LTNPNPEPVIPKYSNFDENDSKIKFTVS 96


>AL132862-7|CAB70228.1|  129|Caenorhabditis elegans Hypothetical
           protein Y73F8A.12 protein.
          Length = 129

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 178 LKNSNPPPECPMHKKTDENEAPKKKTYS 261
           L N NP P  P +   DEN++  K T S
Sbjct: 69  LTNPNPEPVIPKYSNFDENDSKIKFTVS 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,329,093
Number of Sequences: 27780
Number of extensions: 170326
Number of successful extensions: 560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)